Sodium in PDB 5hn2: Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex

The structure of Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex, PDB code: 5hn2 was solved by Z.P.Luo, J.Sheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.90 / 1.50
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	42.336, 42.336, 58.646, 90.00, 90.00, 120.00
R / Rfree (%)	12.3 / 14

The binding sites of Sodium atom in the Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex (pdb code 5hn2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex, PDB code: 5hn2:

Sodium binding site 1 out of 1 in the Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Base Pairing and Structure Insights Into the 5-Formylcytosine in Rna Duplex within 5.0Å range: probe atom residue distance (Å) B Occ F:Na101 b:30.8 occ:1.00 O F:HOH224 2.0 32.4 1.0 O F:HOH208 2.1 33.6 1.0 O E:HOH111 2.1 25.3 1.0 O F:HOH218 2.2 29.7 1.0 O E:HOH136 2.2 30.6 0.5 O E:HOH121 3.9 41.4 1.0 O E:HOH116 4.0 26.9 1.0 N7 F:G1 4.2 19.2 1.0 O4 E:U6 4.3 18.2 1.0 O6 F:G1 4.3 17.9 1.0 O4 F:U2 4.3 20.9 1.0 O E:HOH122 4.5 37.4 1.0 N6 E:A7 4.9 17.6 1.0 C5 F:G1 5.0 19.7 1.0

R.Wang, Z.Luo, K.He, M.O.Delaney, D.Chen, J.Sheng. Base Pairing and Structural Insights Into the 5-Formylcytosine in Rna Duplex. Nucleic Acids Res. V. 44 4968 2016.
ISSN: ESSN 1362-4962
PubMed: 27079978
DOI: 10.1093/NAR/GKW235