Sodium in PDB 5hkz: Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form)

The structure of Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form), PDB code: 5hkz was solved by S.Lovell, K.P.Battaile, N.Mehzabeen, N.Zhang, A.Cooper, P.Gao, R.P.Perez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.67 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.164, 56.572, 58.228, 90.00, 107.15, 90.00
R / Rfree (%)	16.2 / 21.3

The binding sites of Sodium atom in the Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form) (pdb code 5hkz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form), PDB code: 5hkz:

Sodium binding site 1 out of 1 in the Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:17.2 occ:1.00 OD1 A:ASP229 2.3 18.4 1.0 O A:TYR235 2.3 16.0 1.0 OD1 A:ASN233 2.3 16.8 1.0 OE2 A:GLU240 2.5 18.8 1.0 OE1 A:GLU240 2.6 18.6 1.0 CD A:GLU240 2.9 23.8 1.0 OG1 A:THR231 2.9 18.5 1.0 O A:HOH558 2.9 21.6 1.0 CG A:ASN233 3.2 16.9 1.0 CG A:ASP229 3.3 22.2 1.0 C A:TYR235 3.4 15.3 1.0 ND2 A:ASN233 3.7 18.8 1.0 CA A:ASP229 4.0 17.2 1.0 N A:TYR235 4.0 17.7 1.0 CB A:ASP229 4.1 21.7 1.0 N A:ASN233 4.2 17.3 1.0 N A:THR231 4.2 17.9 1.0 OD2 A:ASP229 4.2 19.6 1.0 CB A:THR231 4.2 14.4 1.0 CA A:TYR235 4.2 18.8 1.0 C A:ASP229 4.3 16.6 1.0 N A:ILE236 4.3 14.2 1.0 N A:CYS232 4.4 16.9 1.0 CG A:GLU240 4.4 16.4 1.0 CB A:ASN233 4.4 16.7 1.0 CA A:ILE236 4.4 15.2 1.0 CA A:THR231 4.5 15.5 1.0 C A:THR231 4.6 18.9 1.0 CB A:TYR235 4.6 16.9 1.0 N A:LEU230 4.6 13.7 1.0 N A:ASP234 4.7 17.2 1.0 CA A:ASN233 4.7 18.6 1.0 C A:ASN233 4.8 16.8 1.0 N A:SER237 4.8 14.4 1.0 O A:ASP229 4.8 18.8 1.0 CD1 A:ILE236 4.9 15.1 1.0 CG2 A:THR231 4.9 19.0 1.0 OE2 A:GLU164 5.0 19.1 1.0

N.Zhang, D.Ferris, S.Lovell, A.Smalter-Hall, K.P.Battaile, A.Anbanandam, P.Gao, R.Hanzlik, R.P.Perez. Crystal Structure of C-Cbl Tkbd in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8 A Resolution (P21 Form) To Be Published.