Atomistry » Sodium » PDB 5gu8-5hl0 » 5hky
Atomistry »
  Sodium »
    PDB 5gu8-5hl0 »
      5hky »

Sodium in PDB 5hky: Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form)

Protein crystallography data

The structure of Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form), PDB code: 5hky was solved by S.Lovell, K.P.Battaile, N.Mehzabeen, N.Zhang, A.Cooper, P.Gao, R.P.Perez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.20 / 1.80
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 122.810, 122.810, 58.440, 90.00, 90.00, 120.00
R / Rfree (%) 15.7 / 18

Other elements in 5hky:

The structure of Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) (pdb code 5hky). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form), PDB code: 5hky:

Sodium binding site 1 out of 1 in 5hky

Go back to Sodium Binding Sites List in 5hky
Sodium binding site 1 out of 1 in the Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:18.2
occ:1.00
OD1 A:ASP229 2.2 18.5 1.0
O A:TYR235 2.3 19.1 1.0
OD1 A:ASN233 2.4 22.2 1.0
OE2 A:GLU240 2.4 18.9 1.0
OE1 A:GLU240 2.6 21.2 1.0
OG1 A:THR231 2.8 21.4 1.0
CD A:GLU240 2.9 25.2 1.0
O A:HOH539 3.1 24.6 1.0
CG A:ASN233 3.3 20.5 1.0
CG A:ASP229 3.3 20.3 1.0
C A:TYR235 3.4 19.1 1.0
ND2 A:ASN233 3.7 25.1 1.0
CA A:ASP229 4.0 16.9 1.0
N A:ASN233 4.1 22.5 1.0
N A:TYR235 4.1 18.6 1.0
CB A:THR231 4.1 18.7 1.0
N A:THR231 4.1 17.1 1.0
OD2 A:ASP229 4.1 18.6 1.0
CB A:ASP229 4.2 18.3 1.0
CA A:TYR235 4.3 17.7 1.0
N A:CYS232 4.3 17.7 1.0
C A:ASP229 4.3 15.3 1.0
N A:ILE236 4.4 18.6 1.0
CG A:GLU240 4.4 17.0 1.0
CB A:ASN233 4.4 18.5 1.0
CA A:THR231 4.5 16.5 1.0
CA A:ILE236 4.5 20.5 1.0
C A:THR231 4.5 18.6 1.0
N A:LEU230 4.6 16.3 1.0
CB A:TYR235 4.6 22.5 1.0
CA A:ASN233 4.6 22.2 1.0
N A:ASP234 4.7 20.1 1.0
CD1 A:ILE236 4.8 20.5 1.0
C A:ASN233 4.8 26.9 1.0
CG2 A:THR231 4.8 18.9 1.0
O A:ASP229 4.8 18.0 1.0
N A:SER237 4.9 18.5 1.0

Reference:

N.Zhang, D.Ferris, S.Lovell, A.Smalter-Hall, K.P.Battaile, A.Anbanandam, P.Gao, R.Hanzlik, R.P.Perez. Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) To Be Published.
Page generated: Tue Dec 15 11:03:34 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy