Sodium in PDB 5hky: Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form)

The structure of Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form), PDB code: 5hky was solved by S.Lovell, K.P.Battaile, N.Mehzabeen, N.Zhang, A.Cooper, P.Gao, R.P.Perez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.20 / 1.80
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	122.810, 122.810, 58.440, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 18

The structure of Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) (pdb code 5hky). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form), PDB code: 5hky:

Sodium binding site 1 out of 1 in the Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:18.2 occ:1.00 OD1 A:ASP229 2.2 18.5 1.0 O A:TYR235 2.3 19.1 1.0 OD1 A:ASN233 2.4 22.2 1.0 OE2 A:GLU240 2.4 18.9 1.0 OE1 A:GLU240 2.6 21.2 1.0 OG1 A:THR231 2.8 21.4 1.0 CD A:GLU240 2.9 25.2 1.0 O A:HOH539 3.1 24.6 1.0 CG A:ASN233 3.3 20.5 1.0 CG A:ASP229 3.3 20.3 1.0 C A:TYR235 3.4 19.1 1.0 ND2 A:ASN233 3.7 25.1 1.0 CA A:ASP229 4.0 16.9 1.0 N A:ASN233 4.1 22.5 1.0 N A:TYR235 4.1 18.6 1.0 CB A:THR231 4.1 18.7 1.0 N A:THR231 4.1 17.1 1.0 OD2 A:ASP229 4.1 18.6 1.0 CB A:ASP229 4.2 18.3 1.0 CA A:TYR235 4.3 17.7 1.0 N A:CYS232 4.3 17.7 1.0 C A:ASP229 4.3 15.3 1.0 N A:ILE236 4.4 18.6 1.0 CG A:GLU240 4.4 17.0 1.0 CB A:ASN233 4.4 18.5 1.0 CA A:THR231 4.5 16.5 1.0 CA A:ILE236 4.5 20.5 1.0 C A:THR231 4.5 18.6 1.0 N A:LEU230 4.6 16.3 1.0 CB A:TYR235 4.6 22.5 1.0 CA A:ASN233 4.6 22.2 1.0 N A:ASP234 4.7 20.1 1.0 CD1 A:ILE236 4.8 20.5 1.0 C A:ASN233 4.8 26.9 1.0 CG2 A:THR231 4.8 18.9 1.0 O A:ASP229 4.8 18.0 1.0 N A:SER237 4.9 18.5 1.0

N.Zhang, D.Ferris, S.Lovell, A.Smalter-Hall, K.P.Battaile, A.Anbanandam, P.Gao, R.Hanzlik, R.P.Perez. Crystal Structure of C-Cbl Tkbd Domain in Complex with SPRY2 Peptide (36-60, PY55) Refined to 1.8A Resolution (P6 Form) To Be Published.