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Sodium in PDB 5hkx: Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution

Protein crystallography data

The structure of Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution, PDB code: 5hkx was solved by S.Lovell, K.P.Battaile, N.Mehzabeen, N.Zhang, A.Cooper, P.Gao, R.P.Perez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.47 / 1.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.075, 108.737, 49.304, 90.00, 115.31, 90.00
R / Rfree (%) 16.7 / 21.4

Other elements in 5hkx:

The structure of Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution (pdb code 5hkx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution, PDB code: 5hkx:

Sodium binding site 1 out of 1 in 5hkx

Go back to Sodium Binding Sites List in 5hkx
Sodium binding site 1 out of 1 in the Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na504

b:17.4
occ:1.00
OD1 A:ASP229 2.3 18.6 1.0
O A:TYR235 2.4 19.2 1.0
OD1 A:ASN233 2.5 17.7 1.0
OE2 A:GLU240 2.5 20.4 1.0
OG1 A:THR231 2.5 19.2 1.0
O A:HOH667 2.6 18.1 1.0
OE1 A:GLU240 2.9 20.8 1.0
CD A:GLU240 3.1 23.6 1.0
CG A:ASP229 3.4 20.6 1.0
CG A:ASN233 3.6 19.9 1.0
C A:TYR235 3.6 14.2 1.0
CB A:THR231 3.8 21.8 1.0
N A:THR231 3.9 17.2 1.0
N A:ASN233 4.1 17.7 1.0
N A:TYR235 4.1 17.5 1.0
CA A:ASP229 4.2 15.1 1.0
OD2 A:ASP229 4.2 21.8 1.0
N A:CYS232 4.2 19.7 1.0
CA A:THR231 4.2 18.8 1.0
ND2 A:ASN233 4.2 28.1 1.0
CB A:ASP229 4.2 16.8 1.0
C A:ASP229 4.3 17.8 1.0
CA A:TYR235 4.3 21.5 1.0
C A:THR231 4.3 19.7 1.0
CG2 A:THR231 4.4 27.4 1.0
O A:HOH747 4.4 29.1 1.0
N A:ILE236 4.5 13.5 1.0
CB A:TYR235 4.6 17.9 1.0
N A:LEU230 4.6 17.9 1.0
CG A:GLU240 4.6 16.5 1.0
CB A:ASN233 4.6 18.8 1.0
CA A:ILE236 4.7 14.7 1.0
O A:HOH609 4.7 26.1 1.0
N A:ASP234 4.7 19.1 1.0
CA A:ASN233 4.8 20.4 1.0
O A:ASP229 4.8 19.6 1.0
OE2 A:GLU164 4.8 20.4 1.0
C A:ASN233 4.9 25.0 1.0
N A:SER237 5.0 13.7 1.0

Reference:

N.Zhang, D.Ferris, S.Lovell, A.Smalter-Hall, K.P.Battaile, A.Anbanandam, P.Gao, R.Hanzlik, R.P.Perez. Crystal Structure of C-Cbl Tkbd-Ring Domains (Y371E Mutant) Refined to 1.85 A Resolution To Be Published.
Page generated: Tue Dec 15 11:03:27 2020

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