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Sodium in PDB 5hdg: Crystal Structure of Heat Shock Factor 1-Dbd

Protein crystallography data

The structure of Crystal Structure of Heat Shock Factor 1-Dbd, PDB code: 5hdg was solved by H.Feng, W.Liu, D.C.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.21 / 1.70
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 48.610, 64.420, 68.770, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Heat Shock Factor 1-Dbd (pdb code 5hdg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Heat Shock Factor 1-Dbd, PDB code: 5hdg:

Sodium binding site 1 out of 1 in 5hdg

Go back to Sodium Binding Sites List in 5hdg
Sodium binding site 1 out of 1 in the Crystal Structure of Heat Shock Factor 1-Dbd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Heat Shock Factor 1-Dbd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:22.8
occ:1.00
OD1 A:ASP32 2.4 25.5 1.0
O A:ILE35 2.4 18.1 1.0
O A:ASP28 2.4 26.7 1.0
O A:VAL26 2.5 20.9 1.0
OG1 A:THR31 2.5 24.3 1.0
O A:LEU25 3.0 22.4 1.0
C A:VAL26 3.2 16.3 1.0
N A:ASP32 3.4 26.1 1.0
C A:ASP28 3.5 28.2 1.0
CG A:ASP32 3.5 27.9 1.0
C A:THR31 3.6 23.3 1.0
C A:ILE35 3.6 16.1 1.0
CA A:ASP32 3.6 22.9 1.0
CB A:THR31 3.7 29.8 1.0
N A:ASP28 3.8 21.4 1.0
CA A:VAL26 3.8 15.4 1.0
O A:THR31 4.0 23.4 1.0
C A:LEU25 4.0 23.4 1.0
CA A:THR31 4.0 20.3 1.0
CA A:ASP28 4.1 26.6 1.0
CA A:CYS36 4.1 16.8 1.0
O A:HOH347 4.1 23.1 1.0
C A:SER27 4.1 24.8 1.0
CB A:ASP32 4.2 29.0 1.0
N A:SER27 4.2 18.8 1.0
N A:THR31 4.2 27.1 1.0
N A:CYS36 4.3 18.7 1.0
CG2 A:ILE35 4.3 17.8 1.0
N A:VAL26 4.4 20.0 1.0
CB A:ASP28 4.5 21.2 1.0
OD2 A:ASP32 4.5 25.9 1.0
N A:PRO29 4.5 28.4 1.0
CB A:CYS36 4.5 19.4 1.0
CA A:SER27 4.6 19.5 1.0
O A:SER27 4.6 24.7 1.0
CA A:ILE35 4.7 20.0 1.0
CA A:PRO29 4.8 29.5 1.0
CG2 A:THR31 4.9 29.3 1.0
C A:ASP32 4.9 25.6 1.0
CB A:ILE35 5.0 19.1 1.0

Reference:

H.Feng, W.Liu, D.C.Wang. HSF1-Dbd Crystal Structure To Be Published.
Page generated: Tue Dec 15 11:03:04 2020

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