Sodium in PDB 5haz: Structure of Chaetomium Thermophilum NUP170 Ctd

The structure of Structure of Chaetomium Thermophilum NUP170 Ctd, PDB code: 5haz was solved by D.H.Lin, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.26 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	141.260, 54.770, 108.200, 90.00, 91.05, 90.00
R / Rfree (%)	20.6 / 23.1

The binding sites of Sodium atom in the Structure of Chaetomium Thermophilum NUP170 Ctd (pdb code 5haz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Chaetomium Thermophilum NUP170 Ctd, PDB code: 5haz:

Sodium binding site 1 out of 1 in the Structure of Chaetomium Thermophilum NUP170 Ctd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Chaetomium Thermophilum NUP170 Ctd within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1504 b:1.0 occ:1.00 HG3 A:ARG1130 1.8 69.6 1.0 HD3 A:ARG1130 2.1 65.3 1.0 HB2 A:ARG1130 2.3 72.0 1.0 CG A:ARG1130 2.3 58.0 1.0 CD A:ARG1130 2.5 54.4 1.0 OD1 A:ASP1128 2.6 55.4 1.0 CB A:ARG1130 2.8 60.0 1.0 H A:ARG1130 2.9 76.6 1.0 HD2 A:ARG1130 3.0 65.3 1.0 HH11 A:ARG1130 3.2 58.9 1.0 HG2 A:ARG1130 3.2 69.6 1.0 HB3 A:ARG1130 3.5 72.0 1.0 HD2 A:PRO1129 3.5 72.4 1.0 N A:ARG1130 3.6 63.8 1.0 CG A:ASP1128 3.6 53.5 1.0 CA A:ARG1130 3.8 65.2 1.0 NE A:ARG1130 3.8 54.8 1.0 OD2 A:ASP1128 3.9 49.7 1.0 NH1 A:ARG1130 4.0 49.1 1.0 CZ A:ARG1130 4.4 52.7 1.0 CD A:PRO1129 4.4 60.3 1.0 HA A:ARG1130 4.4 78.3 1.0 HE A:ARG1130 4.5 65.8 1.0 HB2 A:PRO1129 4.7 78.8 1.0 N A:PRO1129 4.7 61.2 1.0 C A:PRO1129 4.7 65.1 1.0 HH12 A:ARG1130 4.7 58.9 1.0 C A:ARG1130 4.8 68.7 1.0 O A:HOH1938 4.8 59.4 1.0 CB A:ASP1128 5.0 54.2 1.0 HG2 A:PRO1129 5.0 77.2 1.0 HD3 A:PRO1129 5.0 72.4 1.0

D.H.Lin, T.Stuwe, S.Schilbach, E.J.Rundlet, T.Perriches, G.Mobbs, Y.Fan, K.Thierbach, F.M.Huber, L.N.Collins, A.M.Davenport, Y.E.Jeon, A.Hoelz. Architecture of the Symmetric Core of the Nuclear Pore. Science V. 352 F1015 2016.
ISSN: ESSN 1095-9203
PubMed: 27081075
DOI: 10.1126/SCIENCE.AAF1015