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Sodium in PDB 5hay: Crystal Structure of Chaetomium Thermophilum NUP170 Ctd Y905M L1007M L1183M V1292M Mutant

Protein crystallography data

The structure of Crystal Structure of Chaetomium Thermophilum NUP170 Ctd Y905M L1007M L1183M V1292M Mutant, PDB code: 5hay was solved by D.H.Lin, Y.Fan, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.19 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.790, 101.700, 193.800, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Chaetomium Thermophilum NUP170 Ctd Y905M L1007M L1183M V1292M Mutant (pdb code 5hay). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Chaetomium Thermophilum NUP170 Ctd Y905M L1007M L1183M V1292M Mutant, PDB code: 5hay:

Sodium binding site 1 out of 1 in 5hay

Go back to Sodium Binding Sites List in 5hay
Sodium binding site 1 out of 1 in the Crystal Structure of Chaetomium Thermophilum NUP170 Ctd Y905M L1007M L1183M V1292M Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Chaetomium Thermophilum NUP170 Ctd Y905M L1007M L1183M V1292M Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1501

b:62.4
occ:1.00
O A:ILE1096 2.3 65.2 1.0
OD1 A:ASN1092 2.3 56.4 1.0
OE1 A:GLN1101 2.7 52.3 1.0
O A:THR1093 2.8 60.1 1.0
O A:HOH1621 2.9 56.9 1.0
H A:ILE1096 3.3 66.0 1.0
H A:THR1093 3.3 57.9 1.0
CG A:ASN1092 3.5 59.2 1.0
C A:ILE1096 3.5 64.0 1.0
C A:THR1093 3.8 56.4 1.0
CD A:GLN1101 3.8 66.2 1.0
HA A:ILE1094 3.9 80.0 1.0
HD21 A:ASN1092 3.9 84.3 1.0
HB A:ILE1096 4.0 70.0 1.0
N A:THR1093 4.0 48.2 1.0
N A:ILE1096 4.0 55.0 1.0
HA A:ASN1092 4.1 73.1 1.0
ND2 A:ASN1092 4.1 70.2 1.0
HE22 A:GLN1101 4.2 80.3 1.0
CA A:ILE1096 4.3 58.1 1.0
H A:GLY1095 4.3 75.0 1.0
HA A:SER1097 4.4 75.9 1.0
NE2 A:GLN1101 4.4 66.9 1.0
HD12 A:ILE1094 4.5 84.4 1.0
CA A:THR1093 4.5 53.1 1.0
N A:SER1097 4.6 68.6 1.0
CB A:ILE1096 4.6 58.3 1.0
CA A:ILE1094 4.6 66.6 1.0
N A:ILE1094 4.6 59.8 1.0
HG3 A:GLN1101 4.6 72.4 1.0
C A:SER1097 4.6 64.3 1.0
CB A:ASN1092 4.7 44.7 1.0
CA A:ASN1092 4.7 60.9 1.0
N A:ARG1098 4.7 65.9 1.0
N A:GLY1095 4.7 62.5 1.0
HG22 A:ILE1096 4.7 72.0 1.0
H A:ARG1098 4.8 79.0 1.0
HA A:ARG1098 4.8 82.0 1.0
CA A:SER1097 4.8 63.2 1.0
C A:ASN1092 4.8 58.0 1.0
CG A:GLN1101 4.8 60.3 1.0
HB A:THR1093 4.9 66.4 1.0
C A:ILE1094 5.0 64.3 1.0
HD22 A:ASN1092 5.0 84.3 1.0

Reference:

D.H.Lin, T.Stuwe, S.Schilbach, E.J.Rundlet, T.Perriches, G.Mobbs, Y.Fan, K.Thierbach, F.M.Huber, L.N.Collins, A.M.Davenport, Y.E.Jeon, A.Hoelz. Architecture of the Symmetric Core of the Nuclear Pore. Science V. 352 F1015 2016.
ISSN: ESSN 1095-9203
PubMed: 27081075
DOI: 10.1126/SCIENCE.AAF1015
Page generated: Tue Dec 15 11:02:46 2020

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