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Sodium in PDB 5h6x: The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila

Protein crystallography data

The structure of The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila, PDB code: 5h6x was solved by N.Zhang, X.Chen, X.Gong, H.Ge, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.910, 68.905, 70.357, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.2

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila (pdb code 5h6x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila, PDB code: 5h6x:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 5h6x

Go back to Sodium Binding Sites List in 5h6x
Sodium binding site 1 out of 2 in the The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:23.7
occ:1.00
N A:ARG172 3.0 18.6 1.0
OG1 A:THR175 3.2 20.6 1.0
O A:HOH364 3.2 39.9 1.0
CA A:PHE171 3.6 20.4 1.0
NZ B:LYS123 3.7 34.8 1.0
CB A:THR175 3.7 18.5 1.0
C A:PHE171 3.8 19.4 1.0
CB A:ARG172 3.8 20.6 1.0
CD B:LYS123 3.9 28.8 1.0
CB A:PHE171 4.0 18.9 1.0
CA A:ARG172 4.0 19.3 1.0
CG A:ARG172 4.0 21.9 1.0
CE B:LYS123 4.1 31.5 1.0
CG2 A:THR175 4.1 19.8 1.0
CD1 A:PHE171 4.1 21.1 1.0
O A:ARG172 4.5 18.4 1.0
CG A:PHE171 4.6 19.4 1.0
O A:GLY170 4.6 26.4 1.0
CG B:LYS123 4.8 24.1 1.0
C A:ARG172 4.8 19.0 1.0
N A:PHE171 4.9 21.8 1.0

Sodium binding site 2 out of 2 in 5h6x

Go back to Sodium Binding Sites List in 5h6x
Sodium binding site 2 out of 2 in the The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From Intracellular Pathogen Legionella Pneumophila within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:15.8
occ:1.00
N A:GLU105 3.4 17.3 1.0
CB A:GLU105 3.7 20.5 1.0
N A:ALA104 3.8 17.7 1.0
CB A:ALA104 3.9 17.2 1.0
CB A:THR103 4.0 21.6 1.0
CA A:ALA104 4.1 16.6 1.0
CA A:GLU105 4.1 18.3 1.0
C A:ALA104 4.2 16.4 1.0
OG1 A:THR103 4.3 20.7 1.0
C A:THR103 4.6 19.0 1.0
CA A:THR103 4.8 20.6 1.0
CG2 A:THR103 5.0 21.8 1.0

Reference:

N.Zhang, X.Chen, X.Gong, T.Li, Z.Xie, M.F.Hameed, M.Wang, H.Ge. High-Resolution Crystal Structure of Rpos Fragment Including A Partial Region 1.2 and Region 2 From the Intracellular Pathogen Legionella Pneumophila Crystals V. 8 54 2018.
ISSN: ESSN 2073-4352
DOI: 10.3390/CRYST8020054
Page generated: Tue Dec 15 11:02:31 2020

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