Sodium in PDB 5h3o: Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel

The binding sites of Sodium atom in the Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel (pdb code 5h3o). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel, PDB code: 5h3o:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel within 5.0Å range: probe atom residue distance (Å) B Occ A:Na802 b:11.8 occ:1.00 NA B:NA802 2.4 10.2 1.0 NA A:NA803 3.3 15.2 1.0 O C:ILE377 3.7 6.7 1.0 O D:ILE377 3.7 6.9 1.0 O A:ILE377 3.7 6.7 1.0 O B:ILE377 3.7 6.8 1.0 O C:THR376 4.3 4.7 1.0 O D:THR376 4.4 4.5 1.0 O B:THR376 4.4 4.8 1.0 O A:THR376 4.4 4.6 1.0 C C:ILE377 4.5 5.0 1.0 CA C:ILE377 4.5 4.1 1.0 CA D:ILE377 4.5 4.0 1.0 C D:ILE377 4.5 5.0 1.0 CA B:ILE377 4.6 4.2 1.0 C A:ILE377 4.6 5.0 1.0 C B:ILE377 4.6 5.1 1.0 CA A:ILE377 4.6 4.1 1.0

Sodium binding site 2 out of 3 in the Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel within 5.0Å range: probe atom residue distance (Å) B Occ A:Na803 b:15.2 occ:1.00 NA A:NA802 3.3 11.8 1.0 O A:THR376 3.8 4.6 1.0 O B:THR376 3.8 4.8 1.0 O C:THR376 3.8 4.7 1.0 O D:THR376 3.8 4.5 1.0 OG1 B:THR376 4.8 17.7 1.0 OG1 A:THR376 4.8 19.1 1.0 OG1 C:THR376 4.8 17.9 1.0 OG1 D:THR376 4.9 17.2 1.0 C A:THR376 5.0 3.6 1.0 C B:THR376 5.0 3.7 1.0

Sodium binding site 3 out of 3 in the Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of A Eukaryotic Cyclic Nucleotide-Gated Channel within 5.0Å range: probe atom residue distance (Å) B Occ B:Na802 b:10.2 occ:1.00 NA A:NA802 2.4 11.8 1.0 OE2 B:GLU379 3.5 37.9 1.0 OE2 D:GLU379 3.6 38.7 1.0 OE2 A:GLU379 3.6 38.3 1.0 OE2 C:GLU379 3.6 37.9 1.0 O C:ILE377 3.7 6.7 1.0 O D:ILE377 3.7 6.9 1.0 O B:ILE377 3.7 6.8 1.0 O A:ILE377 3.7 6.7 1.0 CD B:GLU379 4.6 56.8 1.0 CD A:GLU379 4.7 57.3 1.0 CD D:GLU379 4.7 57.0 1.0 CD C:GLU379 4.7 56.3 1.0 C C:ILE377 4.8 5.0 1.0 C D:ILE377 4.8 5.0 1.0 C B:ILE377 4.8 5.1 1.0 C A:ILE377 4.8 5.0 1.0 OE1 B:GLU379 5.0 56.4 1.0

M.Li, X.Zhou, S.Wang, I.Michailidis, Y.Gong, D.Su, H.Li, X.Li, J.Yang. Structure of A Eukaryotic Cyclic-Nucleotide-Gated Channel. Nature V. 542 60 2017.
ISSN: ESSN 1476-4687
PubMed: 28099415
DOI: 10.1038/NATURE20819