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Sodium in PDB 5h35: Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologue From Sulfolobus Solfataricus

Protein crystallography data

The structure of Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologue From Sulfolobus Solfataricus, PDB code: 5h35 was solved by G.Kasuya, M.Hiraizumi, M.Hattori, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.40 / 2.64
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 102.734, 171.391, 103.265, 90.00, 117.94, 90.00
R / Rfree (%) 21.1 / 25.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologue From Sulfolobus Solfataricus (pdb code 5h35). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologue From Sulfolobus Solfataricus, PDB code: 5h35:

Sodium binding site 1 out of 1 in 5h35

Go back to Sodium Binding Sites List in 5h35
Sodium binding site 1 out of 1 in the Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologue From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologue From Sulfolobus Solfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na301

b:54.6
occ:1.00
OD1 D:ASN142 2.1 62.5 1.0
OD1 C:ASN142 2.2 61.6 1.0
OD1 E:ASN142 2.2 63.5 1.0
O E:HOH407 2.2 56.5 1.0
O C:HOH405 2.2 62.1 1.0
O D:HOH302 2.3 61.0 1.0
CG D:ASN142 3.3 59.5 1.0
CG C:ASN142 3.4 62.4 1.0
CG E:ASN142 3.4 61.6 1.0
O C:HOH404 3.8 59.5 1.0
CA C:ASN142 4.0 63.1 1.0
ND2 D:ASN142 4.1 61.9 1.0
O E:HOH403 4.1 56.3 1.0
O D:HOH301 4.1 58.8 1.0
O C:VAL139 4.2 57.1 1.0
CA E:ASN142 4.2 59.9 1.0
O D:VAL139 4.2 59.3 1.0
CA D:ASN142 4.2 56.3 1.0
ND2 C:ASN142 4.3 64.5 1.0
ND2 E:ASN142 4.3 59.3 1.0
O E:VAL139 4.3 53.9 1.0
CB C:ASN142 4.3 56.9 1.0
CB D:ASN142 4.4 55.4 1.0
CB E:ASN142 4.4 57.8 1.0
C C:ASN142 4.7 62.3 1.0
C E:ASN142 4.8 57.5 1.0
C D:ASN142 4.9 58.7 1.0
N C:ASN142 5.0 63.1 1.0

Reference:

G.Kasuya, M.Hiraizumi, A.D.Maturana, K.Kumazaki, Y.Fujiwara, K.Liu, Y.Nakada-Nakura, S.Iwata, K.Tsukada, T.Komori, S.Uemura, Y.Goto, T.Nakane, M.Takemoto, H.E.Kato, K.Yamashita, M.Wada, K.Ito, R.Ishitani, M.Hattori, O.Nureki. Crystal Structures of the Tric Trimeric Intracellular Cation Channel Orthologues Cell Res. V. 26 1288 2016.
ISSN: ISSN 1748-7838
PubMed: 27909292
DOI: 10.1038/CR.2016.140
Page generated: Tue Dec 15 11:02:13 2020

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