Atomistry » Sodium » PDB 5gwl-5hn2 » 5gzt
Atomistry »
  Sodium »
    PDB 5gwl-5hn2 »
      5gzt »

Sodium in PDB 5gzt: Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery

Protein crystallography data

The structure of Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery, PDB code: 5gzt was solved by T.Itoh, T.Hibi, F.Suzuki, I.Sugimoto, A.Fujiwara, K.Inaka, H.Tanaka, K.Ohta, Y.Fujii, A.Taketo, H.Kimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 114.339, 123.486, 130.856, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery (pdb code 5gzt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery, PDB code: 5gzt:

Sodium binding site 1 out of 1 in 5gzt

Go back to Sodium Binding Sites List in 5gzt
Sodium binding site 1 out of 1 in the Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na4001

b:50.5
occ:1.00
O B:THR332 2.3 66.0 1.0
O B:SER354 2.4 44.2 1.0
OE2 B:GLU326 2.5 44.0 1.0
O B:PHE334 2.5 38.2 1.0
CD B:GLU326 3.2 41.2 1.0
OE1 B:GLU326 3.3 34.9 1.0
C B:THR332 3.5 63.2 1.0
C B:SER354 3.6 47.9 1.0
C B:PHE334 3.6 42.5 1.0
N B:PHE334 3.6 53.6 1.0
CB B:SER354 4.0 46.1 1.0
CA B:PHE334 4.1 44.7 1.0
C B:GLY333 4.1 63.9 1.0
CA B:SER354 4.2 48.0 1.0
N B:SER354 4.3 39.6 1.0
CA B:GLY333 4.3 60.5 1.0
N B:GLY333 4.4 61.3 1.0
CD2 B:LEU329 4.4 80.6 1.0
CA B:THR332 4.5 67.6 1.0
CB B:PHE334 4.6 43.3 1.0
N B:PHE355 4.7 43.6 1.0
CG B:GLU326 4.7 42.9 1.0
N B:GLU335 4.7 46.9 1.0
CG B:GLU335 4.8 48.8 1.0
OG B:SER354 4.8 55.4 1.0
CA B:PHE355 4.9 36.0 1.0
O B:HOH4110 5.0 40.5 1.0
O B:GLY333 5.0 56.4 1.0

Reference:

T.Itoh, T.Hibi, F.Suzuki, I.Sugimoto, A.Fujiwara, K.Inaka, H.Tanaka, K.Ohta, Y.Fujii, A.Taketo, H.Kimoto. Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery Plos One V. 11 67310 2016.
ISSN: ESSN 1932-6203
PubMed: 27907169
DOI: 10.1371/JOURNAL.PONE.0167310
Page generated: Tue Dec 15 11:02:12 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy