Sodium in PDB 5gzt: Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery

The structure of Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery, PDB code: 5gzt was solved by T.Itoh, T.Hibi, F.Suzuki, I.Sugimoto, A.Fujiwara, K.Inaka, H.Tanaka, K.Ohta, Y.Fujii, A.Taketo, H.Kimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	114.339, 123.486, 130.856, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 22.1

The binding sites of Sodium atom in the Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery (pdb code 5gzt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery, PDB code: 5gzt:

Sodium binding site 1 out of 1 in the Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi- Modular Enzyme Machinery within 5.0Å range: probe atom residue distance (Å) B Occ B:Na4001 b:50.5 occ:1.00 O B:THR332 2.3 66.0 1.0 O B:SER354 2.4 44.2 1.0 OE2 B:GLU326 2.5 44.0 1.0 O B:PHE334 2.5 38.2 1.0 CD B:GLU326 3.2 41.2 1.0 OE1 B:GLU326 3.3 34.9 1.0 C B:THR332 3.5 63.2 1.0 C B:SER354 3.6 47.9 1.0 C B:PHE334 3.6 42.5 1.0 N B:PHE334 3.6 53.6 1.0 CB B:SER354 4.0 46.1 1.0 CA B:PHE334 4.1 44.7 1.0 C B:GLY333 4.1 63.9 1.0 CA B:SER354 4.2 48.0 1.0 N B:SER354 4.3 39.6 1.0 CA B:GLY333 4.3 60.5 1.0 N B:GLY333 4.4 61.3 1.0 CD2 B:LEU329 4.4 80.6 1.0 CA B:THR332 4.5 67.6 1.0 CB B:PHE334 4.6 43.3 1.0 N B:PHE355 4.7 43.6 1.0 CG B:GLU326 4.7 42.9 1.0 N B:GLU335 4.7 46.9 1.0 CG B:GLU335 4.8 48.8 1.0 OG B:SER354 4.8 55.4 1.0 CA B:PHE355 4.9 36.0 1.0 O B:HOH4110 5.0 40.5 1.0 O B:GLY333 5.0 56.4 1.0

T.Itoh, T.Hibi, F.Suzuki, I.Sugimoto, A.Fujiwara, K.Inaka, H.Tanaka, K.Ohta, Y.Fujii, A.Taketo, H.Kimoto. Crystal Structure of Chitinase Chiw From Paenibacillus Sp. Str. Fpu-7 Reveals A Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery Plos One V. 11 67310 2016.
ISSN: ESSN 1932-6203
PubMed: 27907169
DOI: 10.1371/JOURNAL.PONE.0167310