Sodium in PDB 5gvj: Structure of Fabk (M276A) Mutant From Thermotoga Maritima

All present enzymatic activity of Structure of Fabk (M276A) Mutant From Thermotoga Maritima:
1.3.1.9;

The structure of Structure of Fabk (M276A) Mutant From Thermotoga Maritima, PDB code: 5gvj was solved by E.E.Kim, S.C.Shin, B.H.Ha, J.H.Moon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.65 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	84.096, 115.129, 67.913, 90.00, 106.59, 90.00
R / Rfree (%)	18.1 / 20.7

The binding sites of Sodium atom in the Structure of Fabk (M276A) Mutant From Thermotoga Maritima (pdb code 5gvj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Fabk (M276A) Mutant From Thermotoga Maritima, PDB code: 5gvj:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Fabk (M276A) Mutant From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Fabk (M276A) Mutant From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:20.4 occ:1.00 O A:ILE284 2.3 15.6 1.0 O A:ALA281 2.3 15.2 1.0 O A:ILE212 2.4 18.4 1.0 O A:VAL213 2.5 19.8 1.0 O A:HOH523 2.5 17.6 1.0 O A:ALA215 2.5 20.6 1.0 C A:VAL213 3.1 19.2 1.0 C A:ALA281 3.4 16.6 1.0 C A:ILE284 3.5 17.2 1.0 C A:ILE212 3.5 19.8 1.0 CA A:VAL213 3.5 18.1 1.0 C A:ALA215 3.6 19.8 1.0 N A:ALA215 3.7 17.0 1.0 N A:VAL213 4.0 18.7 1.0 N A:LYS214 4.0 20.2 1.0 CA A:GLY282 4.0 14.5 1.0 N A:ILE284 4.0 16.0 1.0 C A:LYS214 4.1 22.1 1.0 N A:GLY282 4.1 14.8 1.0 CA A:ALA215 4.1 20.2 1.0 CA A:ILE284 4.2 16.1 1.0 O A:HOH527 4.3 22.7 1.0 C A:GLY282 4.3 17.1 1.0 OD1 A:ASP285 4.4 23.8 1.0 CB A:ILE284 4.4 15.9 1.0 CA A:ALA281 4.4 15.1 1.0 CA A:LYS214 4.5 19.3 1.0 N A:ASP285 4.5 16.9 1.0 CB A:ALA215 4.5 18.3 1.0 O A:GLY282 4.6 17.0 1.0 O A:LYS214 4.6 20.1 1.0 CB A:ALA281 4.7 16.6 1.0 CA A:ASP285 4.8 21.6 1.0 N A:SER216 4.8 18.1 1.0 N A:LEU283 4.8 14.7 1.0 CA A:ILE212 4.8 16.9 1.0 CB A:VAL213 5.0 22.0 1.0

Sodium binding site 2 out of 2 in the Structure of Fabk (M276A) Mutant From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Fabk (M276A) Mutant From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Na401 b:16.2 occ:1.00 O B:ALA281 2.4 14.0 1.0 O B:HOH560 2.4 18.3 1.0 O B:ILE284 2.4 15.6 1.0 O B:ALA215 2.5 19.0 1.0 O B:ILE212 2.5 16.5 1.0 O B:VAL213 2.5 18.6 1.0 C B:VAL213 3.1 17.1 1.0 C B:ALA281 3.4 16.3 1.0 C B:ALA215 3.5 14.8 1.0 N B:ALA215 3.6 17.1 1.0 CA B:VAL213 3.6 17.1 1.0 C B:ILE212 3.6 19.8 1.0 C B:ILE284 3.6 19.2 1.0 CA B:GLY282 3.9 16.9 1.0 CA B:ALA215 4.0 15.7 1.0 C B:LYS214 4.0 20.0 1.0 N B:LYS214 4.0 18.3 1.0 N B:VAL213 4.1 16.8 1.0 N B:ILE284 4.1 14.7 1.0 N B:GLY282 4.1 16.6 1.0 CA B:ILE284 4.3 17.4 1.0 O B:HOH540 4.3 25.5 1.0 C B:GLY282 4.3 14.3 1.0 CB B:ALA215 4.4 15.1 1.0 OD1 B:ASP285 4.4 22.9 1.0 CB B:ILE284 4.5 17.1 1.0 CA B:LYS214 4.5 18.3 1.0 CA B:ALA281 4.5 14.2 1.0 O B:LYS214 4.6 16.2 1.0 N B:ASP285 4.6 18.8 1.0 N B:SER216 4.7 16.7 1.0 O B:GLY282 4.7 17.4 1.0 N B:LEU283 4.8 12.6 1.0 CB B:ALA281 4.8 15.3 1.0 CA B:ILE212 4.9 18.1 1.0 CA B:ASP285 4.9 20.6 1.0 CB B:VAL213 5.0 18.2 1.0

B.H.Ha, S.C.Shin, J.H.Moon, G.Keum, C.W.Kim, E.E.Kim. Structural and Biochemical Characterization of Fabk From Thermotoga Maritima. Biochem. Biophys. Res. V. 482 968 2017COMMUN..
ISSN: ESSN 1090-2104
PubMed: 27908729
DOI: 10.1016/J.BBRC.2016.11.141