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Sodium in PDB 5gvh: Structure of Fabk From Thermotoga Maritima

Enzymatic activity of Structure of Fabk From Thermotoga Maritima

All present enzymatic activity of Structure of Fabk From Thermotoga Maritima:
1.3.1.9;

Protein crystallography data

The structure of Structure of Fabk From Thermotoga Maritima, PDB code: 5gvh was solved by E.E.Kim, S.C.Shin, B.H.Ha, J.H.Moon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.45 / 2.29
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.611, 77.107, 59.085, 90.00, 99.94, 90.00
R / Rfree (%) 19.3 / 23

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Fabk From Thermotoga Maritima (pdb code 5gvh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Fabk From Thermotoga Maritima, PDB code: 5gvh:

Sodium binding site 1 out of 1 in 5gvh

Go back to Sodium Binding Sites List in 5gvh
Sodium binding site 1 out of 1 in the Structure of Fabk From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Fabk From Thermotoga Maritima within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:39.6
occ:1.00
O A:VAL213 2.4 46.2 1.0
O A:ALA215 2.4 42.2 1.0
O A:ILE212 2.4 37.9 1.0
O A:ALA281 2.4 32.5 1.0
O A:HOH534 2.5 38.9 1.0
O A:ILE284 2.6 38.4 1.0
C A:VAL213 3.0 46.0 1.0
N A:ALA215 3.3 50.4 1.0
C A:ALA281 3.4 35.1 1.0
C A:ALA215 3.5 42.5 1.0
C A:ILE212 3.5 46.9 1.0
CA A:VAL213 3.6 43.2 1.0
CA A:GLY282 3.8 30.3 1.0
C A:ILE284 3.8 42.4 1.0
N A:LYS214 3.8 43.4 1.0
CA A:ALA215 3.9 45.9 1.0
C A:LYS214 3.9 47.8 1.0
N A:GLY282 3.9 33.4 1.0
N A:VAL213 4.1 47.8 1.0
CA A:LYS214 4.2 52.2 1.0
N A:ILE284 4.3 35.5 1.0
C A:GLY282 4.3 32.9 1.0
CB A:ALA215 4.3 41.1 1.0
CA A:ILE284 4.5 40.0 1.0
CA A:ALA281 4.5 34.4 1.0
N A:SER216 4.6 39.2 1.0
OD1 A:ASP285 4.7 46.9 1.0
O A:GLY282 4.7 39.2 1.0
CB A:ILE284 4.7 40.5 1.0
O A:LYS214 4.7 48.3 1.0
CB A:ALA281 4.8 31.0 1.0
CA A:ILE212 4.8 45.6 1.0
N A:LEU283 4.9 34.7 1.0
N A:ASP285 4.9 46.0 1.0

Reference:

B.H.Ha, S.C.Shin, J.H.Moon, G.Keum, C.W.Kim, E.E.Kim. Structural and Biochemical Characterization of Fabk From Thermotoga Maritima. Biochem. Biophys. Res. V. 482 968 2017COMMUN..
ISSN: ESSN 1090-2104
PubMed: 27908729
DOI: 10.1016/J.BBRC.2016.11.141
Page generated: Tue Dec 15 11:02:04 2020

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