Sodium in PDB 5goc: LYS11-Linked Diubiquitin

The structure of LYS11-Linked Diubiquitin, PDB code: 5goc was solved by S.Gao, M.Pan, Y.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.71 / 1.73
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	26.523, 26.733, 43.768, 75.17, 76.00, 80.96
R / Rfree (%)	18.7 / 23.6

The binding sites of Sodium atom in the LYS11-Linked Diubiquitin (pdb code 5goc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the LYS11-Linked Diubiquitin, PDB code: 5goc:

Sodium binding site 1 out of 1 in the LYS11-Linked Diubiquitin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of LYS11-Linked Diubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ D:Na101 b:26.7 occ:0.72 O D:HOH230 2.7 22.8 1.0 O D:GLY53 2.8 16.8 1.0 CG2 D:DTH22 3.5 13.2 1.0 C D:GLY53 3.7 17.8 1.0 CA D:GLY53 4.1 17.6 1.0 O D:HOH233 4.7 16.0 1.0 CB D:DTH22 4.7 12.8 1.0 NZ A:LYS29 4.8 22.4 1.0 O D:HOH269 4.8 23.0 1.0 O D:HOH218 4.8 24.8 1.0 N D:DAR54 4.9 15.4 1.0

S.Gao, M.Pan, Y.Zheng, Y.Huang, Q.Zheng, D.Sun, L.Lu, X.Tan, X.Tan, H.Lan, J.Wang, T.Wang, J.Wang, L.Liu. Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc. V. 138 14497 2016.
ISSN: ESSN 1520-5126
PubMed: 27768314
DOI: 10.1021/JACS.6B09545