Sodium in PDB 5giu: Crystal Structure of Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site

The structure of Crystal Structure of Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site, PDB code: 5giu was solved by V.N.Are, A.Kumar, R.Singh, B.Ghosh, S.N.Jamdar, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.89 / 1.61
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.327, 60.327, 203.515, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 20

The binding sites of Sodium atom in the Crystal Structure of Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site (pdb code 5giu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site, PDB code: 5giu:

Sodium binding site 1 out of 1 in the Crystal Structure of Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:13.2 occ:1.00 OD2 A:ASP210 2.3 12.5 1.0 O1 A:PO4401 2.3 19.5 1.0 OE1 A:GLU328 2.3 14.9 1.0 OD1 A:ASP221 2.3 11.5 1.0 OG1 A:THR223 2.5 11.0 1.0 O A:MET222 2.6 10.9 1.0 C A:MET222 3.1 10.4 1.0 CD A:GLU328 3.1 23.6 1.0 CG A:ASP210 3.2 17.1 1.0 CG A:ASP221 3.3 10.2 1.0 OE2 A:GLU328 3.5 26.7 1.0 P A:PO4401 3.6 15.0 1.0 N A:MET222 3.6 9.6 1.0 O4 A:PO4401 3.7 21.4 1.0 N A:THR223 3.7 10.3 1.0 CA A:MET222 3.8 9.1 1.0 CB A:THR223 3.8 12.0 1.0 OD1 A:ASP210 3.8 28.1 1.0 OD2 A:ASP221 3.9 12.6 1.0 CA A:THR223 4.1 10.8 1.0 OE2 A:GLU314 4.1 20.2 1.0 O3 A:PO4401 4.1 22.6 1.0 C A:ASP221 4.2 10.4 1.0 CB A:ASP210 4.2 13.4 1.0 N A:MET211 4.2 11.7 1.0 CZ A:PHE179 4.3 11.0 1.0 CA A:ASP210 4.3 9.2 1.0 CG A:GLU328 4.3 12.1 1.0 O A:MET211 4.4 10.4 1.0 CB A:GLU328 4.4 11.4 1.0 OE1 A:GLU314 4.5 29.1 1.0 CB A:ASP221 4.5 9.7 1.0 C A:ASP210 4.5 9.7 1.0 CA A:ASP221 4.6 8.0 1.0 NH1 A:ARG326 4.6 18.2 0.5 CD A:GLU314 4.6 23.1 1.0 O2 A:PO4401 4.7 20.7 1.0 CG2 A:THR223 4.9 11.8 1.0 O A:ASP221 4.9 11.8 1.0

V.N.Are, A.Kumar, R.Singh, B.Ghosh, S.N.Jamdar, R.D.Makde. Xaa-Pro Peptidase From Deinococcus Radiodurans, Metal-Free Active Site To Be Published.