Atomistry » Sodium » PDB 5g3g-5gwa » 5g3g
Atomistry »
  Sodium »
    PDB 5g3g-5gwa »
      5g3g »

Sodium in PDB 5g3g: Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase

Protein crystallography data

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3g was solved by R.Ruiz-Arellano, A.Diaz, E.Rosas, E.Rudino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.71 / 1.84
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 93.744, 110.332, 96.484, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 17.6

Other elements in 5g3g:

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase (pdb code 5g3g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3g:

Sodium binding site 1 out of 1 in 5g3g

Go back to Sodium Binding Sites List in 5g3g
Sodium binding site 1 out of 1 in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1476

b:44.9
occ:1.00
O A:HOH2039 2.7 14.4 1.0
O A:HOH2043 2.7 39.7 1.0
OG A:SER45 3.1 30.0 0.5
NH2 A:ARG87 3.2 59.1 1.0
N A:GLY65 3.7 9.8 1.0
OG1 A:THR47 3.7 23.9 1.0
CB A:THR47 3.9 22.0 1.0
CA A:GLY65 3.9 14.9 1.0
O A:HOH2038 4.0 25.1 1.0
O A:HOH2091 4.3 50.0 1.0
O A:SER45 4.3 14.7 0.5
CB A:SER45 4.3 16.7 0.5
CZ A:ARG87 4.3 80.5 1.0
C A:GLY64 4.4 17.3 1.0
CG2 A:THR49 4.4 12.8 0.5
CG2 A:THR47 4.5 20.7 1.0
CB A:SER45 4.5 16.9 0.5
O A:SER45 4.6 12.2 0.5
OG1 A:THR49 4.7 15.8 0.6
CA A:GLY64 4.7 12.2 1.0
N A:GLY64 4.8 13.0 1.0
C A:SER45 5.0 11.7 0.5
OG1 A:THR62 5.0 16.7 1.0

Reference:

R.Ruiz-Arellano, A.Diaz, E.Rosas, V.Stojanoff, E.Rudino. Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase To Be Published.
Page generated: Mon Oct 7 21:09:37 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy