Sodium in PDB 5eg2: SET7/9 N265A in Complex with Adohcy and TAF10 Peptide

All present enzymatic activity of SET7/9 N265A in Complex with Adohcy and TAF10 Peptide:
2.1.1.43;

The structure of SET7/9 N265A in Complex with Adohcy and TAF10 Peptide, PDB code: 5eg2 was solved by G.M.Kroner, R.J.Fick, R.C.Trievel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.91 / 1.55
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	83.198, 83.198, 95.859, 90.00, 90.00, 120.00
R / Rfree (%)	14.7 / 17.1

The binding sites of Sodium atom in the SET7/9 N265A in Complex with Adohcy and TAF10 Peptide (pdb code 5eg2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the SET7/9 N265A in Complex with Adohcy and TAF10 Peptide, PDB code: 5eg2:

Sodium binding site 1 out of 1 in the SET7/9 N265A in Complex with Adohcy and TAF10 Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of SET7/9 N265A in Complex with Adohcy and TAF10 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:29.4 occ:1.00 O A:HOH607 2.8 26.6 1.0 O A:GLY126 2.8 13.9 1.0 OG A:SER128 3.0 14.3 1.0 O A:VAL147 3.1 12.6 1.0 O A:TYR148 3.2 13.3 1.0 N A:SER128 3.5 11.9 1.0 CE1 A:TYR122 3.7 15.1 1.0 C A:GLY127 3.7 11.7 1.0 CG1 A:VAL147 3.7 12.8 1.0 CA A:GLY127 3.7 11.0 1.0 CB A:SER128 3.7 12.4 1.0 C A:VAL147 3.8 11.1 1.0 CB A:VAL147 3.8 12.3 1.0 C A:GLY126 3.9 12.7 1.0 C A:TYR148 3.9 12.7 1.0 O A:HOH573 4.1 17.5 1.0 CG A:GLU151 4.2 23.4 1.0 CA A:SER128 4.2 11.3 1.0 CD1 A:TYR122 4.3 15.0 1.0 N A:GLY127 4.3 12.1 1.0 O A:GLY127 4.4 13.2 1.0 CA A:VAL147 4.4 11.3 1.0 CA A:GLU151 4.5 15.7 1.0 CZ A:TYR122 4.5 13.8 1.0 CA A:PRO149 4.5 14.5 1.0 OH A:TYR122 4.5 16.3 1.0 N A:TYR148 4.5 11.6 1.0 N A:PRO149 4.6 13.2 1.0 N A:GLU151 4.7 15.5 1.0 CA A:TYR148 4.8 11.8 1.0 OE2 A:GLU151 4.8 31.9 1.0 CB A:GLU151 4.9 18.6 1.0

R.J.Fick, G.M.Kroner, B.Nepal, R.Magnani, S.Horowitz, R.L.Houtz, S.Scheiner, R.C.Trievel. Sulfur-Oxygen Chalcogen Bonding Mediates Adomet Recognition in the Lysine Methyltransferase SET7/9. Acs Chem.Biol. V. 11 748 2016.
ISSN: ESSN 1554-8937
PubMed: 26713889
DOI: 10.1021/ACSCHEMBIO.5B00852