Sodium in PDB 5eba: Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5eba was solved by P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	64.53 / 2.30
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	73.860, 80.110, 69.210, 90.00, 111.19, 90.00
*R / R_free (%)*	17.8 / 23.5

Other elements in 5eba:

The structure of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 5eba). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5eba:

Sodium binding site 1 out of 1 in 5eba

Go back to

Sodium Binding Sites List in 5eba

Sodium binding site 1 out of 1 in the Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na402 b:42.0 occ:1.00	O	A:ASP302	2.3	33.0	1.0
	O	A:SER18	2.4	30.5	1.0
	O	A:LEU305	2.6	27.3	1.0
	O	A:HOH616	2.6	24.0	1.0
	C	A:ASP302	3.4	33.3	1.0
	C	A:LEU305	3.5	27.2	1.0
	C	A:SER18	3.6	29.8	1.0
	CA	A:SER306	3.8	25.9	1.0
	N	A:SER306	4.0	26.2	1.0
	CA	A:ASP302	4.1	32.2	1.0
	O	A:HOH527	4.2	47.9	1.0
	CB	A:ASP302	4.2	32.5	1.0
	N	A:LEU305	4.3	30.1	1.0
	CA	A:SER18	4.5	31.6	1.0
	CA	A:LEU305	4.5	28.3	1.0
	N	A:ALA303	4.5	34.7	1.0
	N	A:PHE19	4.5	28.3	1.0
	CA	A:PHE19	4.6	27.4	1.0
	CB	A:PHE19	4.6	26.9	1.0
	CB	A:SER306	4.7	26.1	1.0
	C	A:ALA303	4.7	35.8	1.0
	O	A:ALA303	4.7	37.3	1.0
	CA	A:ALA303	4.8	35.9	1.0
	C	A:SER306	4.8	25.1	1.0

Reference:

P.Mahanta, A.Bhardwaj, V.S.Reddy, S.Ramakumar. Crystal Structure of Aromatic Mutant (Y343A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.

Page generated: Mon Oct 7 20:44:50 2024

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