Sodium in PDB 5e9n: Steccherinum Murashkinskyi Laccase at 0.95 Resolution

All present enzymatic activity of Steccherinum Murashkinskyi Laccase at 0.95 Resolution:
1.10.3.2;

The structure of Steccherinum Murashkinskyi Laccase at 0.95 Resolution, PDB code: 5e9n was solved by K.M.Polyakov, O.A.Glazunova, T.V.Fedorova, O.V.Koroleva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 0.95
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.510, 83.270, 111.040, 90.00, 90.00, 90.00
R / Rfree (%)	12.1 / 13.9

The structure of Steccherinum Murashkinskyi Laccase at 0.95 Resolution also contains other interesting chemical elements:

Copper

(Cu)

6 atoms

The binding sites of Sodium atom in the Steccherinum Murashkinskyi Laccase at 0.95 Resolution (pdb code 5e9n). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Steccherinum Murashkinskyi Laccase at 0.95 Resolution, PDB code: 5e9n:

Sodium binding site 1 out of 1 in the Steccherinum Murashkinskyi Laccase at 0.95 Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Steccherinum Murashkinskyi Laccase at 0.95 Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na605 b:13.2 occ:0.50 O A:HOH959 2.3 18.7 1.0 O A:VAL317 2.3 12.0 1.0 O A:HOH1390 2.4 33.0 1.0 O A:HOH1171 2.4 18.2 0.5 O A:HOH1144 2.4 17.6 1.0 O A:HOH1243 2.4 25.9 1.0 H A:VAL317 2.8 11.6 1.0 C A:VAL317 3.4 9.5 1.0 N A:VAL317 3.8 10.0 1.0 HB A:VAL317 3.8 10.6 1.0 O A:HOH1209 3.9 22.0 1.0 HA A:PRO318 4.0 10.4 1.0 O A:GLY319 4.0 15.3 1.0 CA A:VAL317 4.1 9.7 1.0 O A:HOH1261 4.2 33.0 1.0 HA3 A:GLY316 4.4 11.6 1.0 N A:PRO318 4.4 9.7 1.0 O A:HOH968 4.4 21.9 1.0 CB A:VAL317 4.5 10.6 1.0 CA A:PRO318 4.5 10.5 1.0 O A:TYR419 4.6 11.9 1.0 C A:PRO318 4.7 9.9 1.0 O A:HOH912 4.8 17.1 1.0 C A:GLY316 4.9 10.1 1.0 N A:GLY319 4.9 10.4 1.0 H A:GLY319 5.0 10.4 1.0 O A:HOH971 5.0 18.2 1.0

O.A.Glazunova, K.M.Polyakov, K.V.Moiseenko, S.A.Kurzeev, T.V.Fedorova. Structure-Function Study of Two New Middle-Redox Potential Laccases From Basidiomycetes Antrodiella Faginea and Steccherinum Murashkinskyi. Int. J. Biol. Macromol. V. 118 406 2018.
ISSN: ISSN 1879-0003
PubMed: 29890251
DOI: 10.1016/J.IJBIOMAC.2018.06.038