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Sodium in PDB 5e56: Crystal Structure of Mouse Ctla-4

Protein crystallography data

The structure of Crystal Structure of Mouse Ctla-4, PDB code: 5e56 was solved by A.A.Fedorov, E.V.Fedorov, D.Samanta, J.B.Bonanno, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.81 / 1.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 47.538, 36.598, 65.149, 90.00, 105.13, 90.00
R / Rfree (%) 18 / 20.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mouse Ctla-4 (pdb code 5e56). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mouse Ctla-4, PDB code: 5e56:

Sodium binding site 1 out of 1 in 5e56

Go back to Sodium Binding Sites List in 5e56
Sodium binding site 1 out of 1 in the Crystal Structure of Mouse Ctla-4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mouse Ctla-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:24.0
occ:1.00
O A:TYR63 2.2 30.2 1.0
O A:CYS66 2.3 25.1 1.0
O A:HOH367 2.4 38.5 1.0
O A:PHE60 2.4 25.6 1.0
C A:TYR63 3.4 30.0 1.0
C A:CYS66 3.5 26.6 1.0
C A:PHE60 3.5 23.8 1.0
OG A:SER67 3.9 44.9 1.0
CB A:PHE60 4.1 22.0 1.0
N A:TYR63 4.2 26.3 1.0
CA A:LEU61 4.2 25.1 1.0
CA A:SER67 4.3 27.0 1.0
CA A:TYR63 4.3 28.9 1.0
N A:CYS66 4.3 25.6 1.0
N A:SER67 4.3 25.0 1.0
N A:LEU61 4.3 23.0 1.0
N A:PRO64 4.3 30.3 1.0
CA A:PRO64 4.4 29.7 1.0
C A:LEU61 4.4 25.5 1.0
C A:PRO64 4.4 31.8 1.0
CA A:CYS66 4.5 21.8 1.0
CA A:PHE60 4.5 20.9 1.0
O A:LEU61 4.5 31.2 1.0
CB A:TYR63 4.6 25.7 1.0
O A:PRO64 4.6 39.8 1.0
CB A:SER67 4.6 33.8 1.0
O A:GLY59 4.6 25.4 1.0
N A:PHE65 4.8 27.1 0.5
O A:HOH317 4.8 29.7 1.0
N A:PHE65 4.8 28.0 0.5
N A:ASP62 5.0 25.7 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, D.Samanta, J.B.Bonanno, S.C.Almo. Crystal Structure of Mouse Ctla-4 To Be Published.
Page generated: Mon Oct 7 20:44:04 2024

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