Sodium in PDB 5dzo: Crystal Structure of Human T-Cell Immunoglobulin and Mucin Domain Protein 1

The structure of Crystal Structure of Human T-Cell Immunoglobulin and Mucin Domain Protein 1, PDB code: 5dzo was solved by S.Yuan, Z.Rao, X.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.00 / 1.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	50.739, 50.739, 84.162, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 17.6

The binding sites of Sodium atom in the Crystal Structure of Human T-Cell Immunoglobulin and Mucin Domain Protein 1 (pdb code 5dzo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human T-Cell Immunoglobulin and Mucin Domain Protein 1, PDB code: 5dzo:

Sodium binding site 1 out of 1 in the Crystal Structure of Human T-Cell Immunoglobulin and Mucin Domain Protein 1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human T-Cell Immunoglobulin and Mucin Domain Protein 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:32.6 occ:1.00 CE1 A:HIS92 3.1 15.1 1.0 O A:SER22 3.4 19.9 1.0 N A:SER22 3.6 18.3 1.0 CB A:TYR21 3.7 13.1 1.0 CB A:MET99 3.8 17.5 1.0 NE2 A:HIS92 3.8 19.7 1.0 OG A:SER22 3.9 37.3 1.0 CG A:MET99 4.1 20.4 1.0 ND1 A:HIS92 4.3 19.8 1.0 C A:SER22 4.3 18.5 1.0 CD1 A:TYR21 4.3 13.9 1.0 SD A:MET99 4.3 29.8 1.0 O A:HOH326 4.4 23.1 1.0 CA A:SER22 4.4 28.0 1.0 CA A:TYR21 4.5 14.3 1.0 CG A:TYR21 4.5 12.3 1.0 C A:TYR21 4.5 14.3 1.0 CG1 A:VAL90 4.7 16.5 1.0 CB A:SER22 4.8 37.5 1.0

S.Yuan, L.Cao, H.Ling, M.Dang, Y.Sun, X.Zhang, Y.Chen, L.Zhang, D.Su, X.Wang, Z.Rao. Tim-1 Acts A Dual-Attachment Receptor For Ebolavirus By Interacting Directly with Viral Gp and the Ps on the Viral Envelope. Protein Cell V. 6 814 2015.
ISSN: ESSN 1674-8018
PubMed: 26487564
DOI: 10.1007/S13238-015-0220-Y