Sodium in PDB 4xpg: X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428

The structure of X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428, PDB code: 4xpg was solved by A.Penmatsa, K.H.Wang, E.Gouaux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.39 / 3.21
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	97.110, 140.080, 167.440, 90.00, 90.00, 90.00
R / Rfree (%)	25.1 / 27.4

The structure of X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428 also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428 (pdb code 4xpg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428, PDB code: 4xpg:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na705 b:76.6 occ:1.00 OD1 A:ASN49 2.5 78.6 1.0 O A:ALA44 2.6 71.8 1.0 O A:SER320 2.6 76.1 1.0 OG A:SER320 2.6 79.9 1.0 CA A:SER320 3.2 65.7 1.0 C A:SER320 3.3 70.3 1.0 OD1 A:ASN352 3.3 67.9 1.0 CB A:SER320 3.4 71.8 1.0 CG A:ASN49 3.5 75.2 1.0 C A:42L701 3.5 80.4 1.0 ND2 A:ASN49 3.8 74.1 1.0 C A:ALA44 3.8 65.5 1.0 CB A:ASP46 4.1 67.7 1.0 N A:ASP46 4.2 78.3 1.0 C4 A:42L701 4.3 65.3 1.0 CG A:ASN352 4.4 69.9 1.0 C3 A:42L701 4.4 67.4 1.0 N A:SER320 4.5 70.2 1.0 N A:42L701 4.5 75.5 1.0 CA A:VAL45 4.5 65.3 1.0 O A:PHE319 4.5 77.0 1.0 N A:LEU321 4.6 66.5 1.0 CB A:ALA48 4.6 70.1 1.0 N A:VAL45 4.6 69.3 1.0 C A:VAL45 4.7 69.7 1.0 ND2 A:ASN352 4.7 69.0 1.0 N A:ASN49 4.7 79.1 1.0 CA A:ASP46 4.7 73.5 1.0 CA A:ALA44 4.8 59.6 1.0 CB A:ASN49 4.8 67.5 1.0

Sodium binding site 2 out of 2 in the X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Structure of Drosophila Dopamine Transporter with Subsiteb Mutations (D121G/S426M) Bound to Beta-Cft or WIN35428 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na706 b:73.0 occ:1.00 OD1 A:ASP420 2.4 80.5 1.0 OG A:SER421 2.4 69.4 1.0 O A:GLY42 2.4 62.7 1.0 O A:VAL45 2.4 72.5 1.0 O A:LEU417 2.4 82.2 1.0 N A:SER421 3.0 70.0 1.0 CG A:ASP420 3.1 77.6 1.0 CB A:SER421 3.2 67.2 1.0 C A:LEU417 3.3 71.7 1.0 CA A:SER421 3.6 69.3 1.0 OD2 A:ASP420 3.6 79.5 1.0 C A:GLY42 3.6 60.2 1.0 C A:VAL45 3.6 69.7 1.0 C A:ASP420 3.8 74.3 1.0 CB A:ASP420 4.0 69.9 1.0 N A:GLY418 4.1 64.9 1.0 O A:PHE43 4.1 66.2 1.0 CA A:LEU417 4.2 65.0 1.0 N A:ASP420 4.2 71.3 1.0 CA A:ASP420 4.2 69.9 1.0 CA A:GLY418 4.2 65.4 1.0 C A:GLY418 4.3 70.9 1.0 CA A:ASP46 4.4 73.5 1.0 O A:THR416 4.4 78.2 1.0 N A:ASP46 4.5 78.3 1.0 CA A:PHE43 4.5 62.0 1.0 C A:PHE43 4.5 64.2 1.0 N A:PHE43 4.5 61.1 1.0 CA A:GLY42 4.5 65.5 1.0 O A:GLY418 4.6 70.5 1.0 CA A:VAL45 4.6 65.3 1.0 O A:ASP420 4.7 73.6 1.0 N A:LEU419 4.8 69.4 1.0 N A:VAL45 4.8 69.3 1.0 CB A:VAL45 4.9 63.9 1.0 C A:SER421 5.0 68.4 1.0

K.H.Wang, A.Penmatsa, E.Gouaux. Structural Basis For Neurotransmitter and Psycho Stimulant Recognition By the Drosophila Dopamine Transporter Nature 2015.
ISSN: ESSN 1476-4687