Sodium in PDB 4xae: Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana

The structure of Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana, PDB code: 4xae was solved by D.Zhou, P.Kandavelu, H.Zhang, B.C.Wang, J.Rose, Y.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.93 / 2.77
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	193.219, 54.554, 78.815, 90.00, 111.54, 90.00
R / Rfree (%)	24.3 / 30

The binding sites of Sodium atom in the Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana (pdb code 4xae). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana, PDB code: 4xae:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Na400 b:36.7 occ:1.00 NE2 A:HIS293 2.5 39.7 1.0 OD1 A:ASP237 2.5 68.6 1.0 NE2 A:HIS235 2.6 49.4 1.0 OD2 A:ASP237 2.7 65.3 1.0 CG A:ASP237 2.9 61.9 1.0 CE1 A:HIS235 3.2 50.6 1.0 CD2 A:HIS293 3.4 39.6 1.0 CE1 A:HIS293 3.4 39.9 1.0 CD2 A:HIS235 3.8 48.0 1.0 CE1 A:PHE309 4.4 41.8 1.0 CB A:ASP237 4.4 55.6 1.0 ND1 A:HIS235 4.4 49.3 1.0 ND1 A:HIS293 4.6 39.8 1.0 CZ A:PHE309 4.6 41.2 1.0 CG A:HIS293 4.6 40.0 1.0 CG A:HIS235 4.7 46.8 1.0 CA A:ASP237 4.9 49.6 1.0 N A:ASP237 5.0 47.7 1.0

Sodium binding site 2 out of 2 in the Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Feruloyl-Coa 6-Hydroxylase (F6H) From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ B:Na400 b:40.2 occ:1.00 NE2 B:HIS235 2.4 43.0 1.0 OD1 B:ASP237 2.6 59.2 1.0 NE2 B:HIS293 2.7 30.3 1.0 OD2 B:ASP237 2.7 59.0 1.0 CG B:ASP237 3.0 56.9 1.0 CE1 B:HIS235 3.0 45.7 1.0 CE1 B:HIS293 3.6 30.7 1.0 CD2 B:HIS235 3.6 43.0 1.0 CD2 B:HIS293 3.7 29.8 1.0 ND1 B:HIS235 4.3 45.1 1.0 CE1 B:PHE309 4.4 32.1 1.0 CB B:ASP237 4.5 51.7 1.0 CZ B:PHE309 4.6 32.7 1.0 CG B:HIS235 4.6 42.1 1.0 ND1 B:HIS293 4.7 30.7 1.0 CG B:HIS293 4.8 31.2 1.0 O B:HOH506 4.8 46.9 1.0 CG2 B:THR242 4.9 36.6 1.0

X.Sun, D.Zhou, P.Kandavelu, H.Zhang, Q.Yuan, B.C.Wang, J.Rose, Y.Yan. Structural Insights Into Substrate Specificity of Feruloyl-Coa 6'-Hydroxylase From Arabidopsis Thaliana. Sci Rep V. 5 10355 2015.
ISSN: ESSN 2045-2322
PubMed: 25993561
DOI: 10.1038/SREP10355