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Sodium in PDB 4wzu: Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae

Enzymatic activity of Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae

All present enzymatic activity of Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae:
2.3.1.180;

Protein crystallography data

The structure of Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae, PDB code: 4wzu was solved by J.Hou, M.Chruszcz, H.Zheng, D.R.Cooper, M.D.Chordia, M.D.Zimmerman, W.F.Anderson, W.Minor, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.00 / 1.88
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.858, 60.212, 68.436, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae (pdb code 4wzu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae, PDB code: 4wzu:

Sodium binding site 1 out of 1 in 4wzu

Go back to Sodium Binding Sites List in 4wzu
Sodium binding site 1 out of 1 in the Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Beta-Ketoacyl-(Acyl Carrier Protein) Synthase III-2 (FABH2) From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:36.6
occ:1.00
 O A:HOH558 2.2 37.2 1.0
O A:HOH551 2.3 50.4 1.0
O A:HOH638 2.3 31.9 1.0
OD2 A:ASP305 2.4 27.9 1.0
O A:GLU244 2.5 31.3 1.0
OD2 A:ASP246 2.5 28.1 1.0
CG A:ASP305 3.4 26.4 1.0
CG A:ASP246 3.4 29.9 1.0
C A:GLU244 3.6 32.4 1.0
OD1 A:ASP246 3.6 30.2 1.0
CB A:ASP305 3.7 25.8 1.0
N A:ASP305 4.1 25.8 1.0
CA A:GLU244 4.1 34.8 1.0
CB A:GLU244 4.1 37.2 1.0
OD1 A:ASP305 4.5 25.8 1.0
CA A:ASP305 4.5 25.1 1.0
O A:HOH520 4.6 35.9 1.0
N A:ILE245 4.7 30.4 1.0
CB A:ASP246 4.7 29.4 1.0
N A:ASP246 4.8 28.1 1.0
O A:HIS303 5.0 28.3 1.0
CG A:GLU244 5.0 41.8 1.0
C A:ASP304 5.0 25.6 1.0

Reference:

J.Hou, J.Hou, M.Chruszcz, H.Zheng, D.R.Cooper, M.D.Chordia, M.D.Zimmerman, W.F.Anderson, W.Minor, Center For Structural Genomics Of Infectiousdiseases (Csgid). N/A N/A.
Page generated: Mon Oct 7 18:57:06 2024

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