Sodium in PDB 4wo9: Lysozyme Post-Surface Acoustic Waves

All present enzymatic activity of Lysozyme Post-Surface Acoustic Waves:
3.2.1.17;

The structure of Lysozyme Post-Surface Acoustic Waves, PDB code: 4wo9 was solved by J.B.French, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.29 / 1.99
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.206, 79.206, 37.644, 90.00, 90.00, 90.00
R / Rfree (%)	14.7 / 20.2

The binding sites of Sodium atom in the Lysozyme Post-Surface Acoustic Waves (pdb code 4wo9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Lysozyme Post-Surface Acoustic Waves, PDB code: 4wo9:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Lysozyme Post-Surface Acoustic Waves


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Post-Surface Acoustic Waves within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:16.5 occ:1.00 O A:HOH333 2.8 39.2 1.0 OH A:TYR23 3.0 12.3 1.0 O A:HOH334 3.4 19.7 1.0 CE2 A:TYR23 3.7 12.2 1.0 CZ A:TYR23 3.7 10.3 1.0 CA A:GLY104 4.2 14.3 1.0 O A:HOH315 4.6 26.5 1.0 O A:ARG21 4.6 15.3 1.0 N A:GLY104 4.8 14.4 1.0 CE1 A:TYR23 4.9 12.0 1.0 CD2 A:TYR23 4.9 8.8 1.0

Sodium binding site 2 out of 2 in the Lysozyme Post-Surface Acoustic Waves


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Lysozyme Post-Surface Acoustic Waves within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:29.5 occ:1.00 O A:SER60 2.3 18.0 1.0 OG A:SER72 2.3 29.5 1.0 O A:ARG73 2.5 27.6 1.0 O A:CYS64 2.5 14.4 1.0 O A:HOH362 2.5 26.3 1.0 O A:HOH344 2.7 17.1 1.0 CB A:SER72 2.9 22.6 1.0 C A:ARG73 3.5 28.0 1.0 C A:CYS64 3.5 14.6 1.0 C A:SER60 3.5 15.5 1.0 C A:SER72 3.8 28.5 1.0 N A:ARG73 3.9 22.4 1.0 CA A:ASN65 3.9 15.9 1.0 CA A:SER72 4.0 25.8 1.0 N A:ASN65 4.1 13.7 1.0 O A:ARG61 4.2 23.9 1.0 O A:SER72 4.2 26.3 1.0 N A:ASN74 4.3 23.1 1.0 CA A:SER60 4.3 13.6 1.0 C A:ARG61 4.3 20.5 1.0 CA A:ARG73 4.3 22.3 1.0 N A:CYS64 4.3 12.3 1.0 CA A:ASN74 4.4 16.8 1.0 N A:ARG61 4.5 15.2 1.0 CA A:CYS64 4.5 14.6 1.0 CB A:ASN74 4.6 15.8 1.0 OD1 A:ASN65 4.6 27.2 1.0 CB A:SER60 4.6 13.5 1.0 CA A:ARG61 4.6 23.1 1.0 CB A:ASN65 4.7 15.3 1.0 N A:TRP62 4.7 18.8 1.0 O A:HOH351 4.9 22.7 1.0 CB A:THR69 4.9 17.0 1.0 N A:TRP63 4.9 14.2 1.0 C A:TRP62 4.9 17.5 1.0 N A:ASP66 4.9 12.5 1.0 N A:SER72 5.0 25.3 1.0 O A:THR69 5.0 24.7 1.0 C A:ASN65 5.0 12.5 1.0

F.Guo, W.Zhou, P.Li, Z.Mao, N.H.Yennawar, J.B.French, T.J.Huang. Precise Manipulation and Patterning of Protein Crystals For Macromolecular Crystallography Using Surface Acoustic Waves. Small 2015.
ISSN: ESSN 1613-6829
PubMed: 25641793
DOI: 10.1002/SMLL.201403262