Atomistry » Sodium » PDB 4wcn-4wxq » 4wm4
Atomistry »
  Sodium »
    PDB 4wcn-4wxq »
      4wm4 »

Sodium in PDB 4wm4: High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa

Enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa

All present enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa:
3.2.1.17;

Protein crystallography data

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa, PDB code: 4wm4 was solved by H.Yamada, T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.96 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.434, 76.434, 37.743, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 22.4

Other elements in 4wm4:

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa (pdb code 4wm4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa, PDB code: 4wm4:

Sodium binding site 1 out of 1 in 4wm4

Go back to Sodium Binding Sites List in 4wm4
Sodium binding site 1 out of 1 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 800 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:20.4
occ:1.00
 O A:SER60 2.2 14.5 1.0
O A:ARG73 2.4 23.3 1.0
OG A:SER72 2.4 20.5 1.0
O A:HOH407 2.5 13.2 1.0
O A:HOH417 2.5 22.2 1.0
O A:CYS64 2.6 10.1 1.0
CB A:SER72 3.0 22.8 1.0
C A:SER60 3.3 12.6 1.0
C A:ARG73 3.4 19.8 1.0
C A:CYS64 3.6 10.0 1.0
N A:ARG73 3.8 21.8 1.0
CA A:ASN65 3.9 11.7 1.0
C A:SER72 4.0 24.1 1.0
CA A:SER60 4.1 11.0 1.0
CA A:SER72 4.2 24.7 1.0
N A:ASN65 4.2 11.3 1.0
O A:ARG61 4.2 19.5 1.0
CA A:ARG73 4.3 21.5 1.0
N A:ASN74 4.3 17.1 1.0
CB A:SER60 4.3 10.0 1.0
C A:ARG61 4.3 18.0 1.0
N A:ARG61 4.3 13.5 1.0
N A:CYS64 4.4 10.7 1.0
CA A:ARG61 4.5 18.2 1.0
CA A:ASN74 4.6 13.7 1.0
O A:SER72 4.6 25.0 1.0
CB A:THR69 4.6 14.2 1.0
O A:HOH406 4.6 12.6 1.0
O A:HOH432 4.7 35.2 1.0
CA A:CYS64 4.7 9.7 1.0
CB A:ASN74 4.7 14.4 1.0
N A:TRP62 4.7 13.9 1.0
N A:ASP66 4.7 8.6 1.0
CB A:ASN65 4.8 13.1 1.0
OD1 A:ASN65 4.8 22.5 1.0
C A:ASN65 4.9 9.5 1.0
O A:THR69 4.9 14.1 1.0
N A:TRP63 5.0 11.0 1.0

Reference:

H.Yamada, T.Nagae, N.Watanabe. High Pressure Protein Crystallography of Hen Egg White Lysozyme Acta Crystallogr.,Sect.D V. 71 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715000292
Page generated: Mon Oct 7 18:53:34 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy