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Sodium in PDB 4wm1: High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa

Enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa

All present enzymatic activity of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa:
3.2.1.17;

Protein crystallography data

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa, PDB code: 4wm1 was solved by H.Yamada, T.Nagae, N.Watanabe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.34 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.287, 77.287, 37.938, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 20.8

Other elements in 4wm1:

The structure of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa (pdb code 4wm1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa, PDB code: 4wm1:

Sodium binding site 1 out of 1 in 4wm1

Go back to Sodium Binding Sites List in 4wm1
Sodium binding site 1 out of 1 in the High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Pressure Protein Crystallography of Hen Egg White Lysozyme at 500 Mpa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:18.5
occ:1.00
 O A:SER60 2.3 14.7 1.0
O A:ARG73 2.4 23.3 1.0
OG A:SER72 2.4 21.6 1.0
O A:HOH382 2.4 23.0 1.0
O A:HOH379 2.5 13.4 1.0
O A:CYS64 2.5 13.0 1.0
CB A:SER72 3.2 24.6 1.0
C A:SER60 3.4 13.8 1.0
C A:ARG73 3.4 19.3 1.0
C A:CYS64 3.5 11.5 1.0
N A:ARG73 3.9 20.8 1.0
CA A:ASN65 3.9 13.7 1.0
CA A:SER60 4.1 12.3 1.0
C A:SER72 4.1 23.6 1.0
N A:ASN65 4.1 12.8 1.0
CA A:ARG73 4.3 18.5 1.0
CA A:SER72 4.3 24.0 1.0
CB A:SER60 4.3 12.2 1.0
N A:ASN74 4.3 18.4 1.0
C A:ARG61 4.4 16.9 1.0
N A:CYS64 4.4 11.9 1.0
N A:ARG61 4.4 14.2 1.0
O A:ARG61 4.4 18.9 1.0
O A:HOH437 4.5 44.4 1.0
O A:SER72 4.6 26.4 1.0
CA A:ASN74 4.6 15.4 1.0
CA A:ARG61 4.7 18.3 1.0
CA A:CYS64 4.7 12.1 1.0
CB A:THR69 4.7 15.2 1.0
OD1 A:ASN65 4.7 24.1 1.0
CB A:ASN74 4.7 15.4 1.0
N A:TRP62 4.7 14.2 1.0
N A:ASP66 4.7 11.1 1.0
O A:HOH378 4.7 15.5 1.0
O A:HOH442 4.8 39.4 1.0
CB A:ASN65 4.8 13.9 1.0
C A:ASN65 4.9 10.9 1.0
O A:THR69 4.9 15.8 1.0
N A:TRP63 4.9 12.2 1.0

Reference:

H.Yamada, T.Nagae, N.Watanabe. High Pressure Protein Crystallography of Hen Egg White Lysozyme Acta Crystallogr.,Sect.D V. 71 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715000292
Page generated: Sun Aug 17 22:07:15 2025

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