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Sodium in PDB 4wje: Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms

Enzymatic activity of Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms

All present enzymatic activity of Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms:
5.3.1.1;

Protein crystallography data

The structure of Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms, PDB code: 4wje was solved by P.Jimenez-Sandoval, K.Rojas-Mendez, S.Lara-Gonzalez, L.G.Brieba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.14 / 1.29
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.642, 106.784, 47.095, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 18.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms (pdb code 4wje). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms, PDB code: 4wje:

Sodium binding site 1 out of 1 in 4wje

Go back to Sodium Binding Sites List in 4wje
Sodium binding site 1 out of 1 in the Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:9.4
occ:1.00
 O A:VAL227 2.3 8.0 1.0
O A:HOH430 2.3 17.7 1.0
O A:ALA222 2.3 9.0 1.0
O A:CYS224 2.3 9.1 1.0
OG A:SER251 2.4 12.0 1.0
C A:VAL227 3.4 7.9 1.0
C A:ALA222 3.5 8.6 1.0
CB A:SER251 3.5 9.7 1.0
C A:CYS224 3.5 9.4 1.0
O A:HOH528 3.8 20.1 1.0
CA A:SER251 4.0 12.1 1.0
N A:CYS224 4.0 8.8 1.0
C A:ALA223 4.1 9.5 1.0
N A:VAL227 4.1 6.0 1.0
CA A:VAL227 4.2 6.6 1.0
O A:PRO225 4.3 9.5 1.0
CB A:VAL227 4.3 7.2 1.0
CA A:ALA222 4.3 7.2 1.0
C A:PRO225 4.3 8.4 1.0
CA A:CYS224 4.4 9.2 1.0
CA A:PRO225 4.4 8.7 1.0
N A:ALA223 4.4 9.1 1.0
N A:PRO225 4.4 7.7 1.0
O A:ALA223 4.4 12.4 1.0
CE1 A:PHE4 4.4 9.2 1.0
N A:ASP228 4.5 7.0 1.0
CA A:ALA223 4.5 9.7 1.0
O A:HOH529 4.6 23.0 1.0
O A:LEU221 4.6 8.8 1.0
CA A:ASP228 4.7 6.9 1.0
C A:SER251 4.7 19.4 1.0
CD1 A:PHE4 4.9 8.5 1.0
N A:ASP226 4.9 7.7 1.0
CG1 A:VAL227 4.9 9.4 1.0

Reference:

P.Jimenez-Sandoval, K.Rojas-Mendez, S.Lara-Gonzalez, L.G.Brieba. Crystal Structure of Trichomonas Vaginalis Triosephosphate Isomerase V45A at 1.3 Angstroms To Be Published.
Page generated: Mon Oct 7 18:52:13 2024

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