Sodium in PDB 4uyr: X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae

The structure of X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae, PDB code: 4uyr was solved by M.Veelders, T.Kraushaar, S.Brueckner, D.Rhinow, H.U.Moesch, L.O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.76 / 0.89
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	30.450, 54.830, 121.910, 90.00, 90.00, 90.00
R / Rfree (%)	12.7 / 13.4

The structure of X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae (pdb code 4uyr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae, PDB code: 4uyr:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1207 b:12.1 occ:1.00 O A:MET145 2.8 7.2 1.0 OD1 A:ASN147 2.8 7.8 1.0 O A:HOH2209 2.9 9.7 1.0 CA A:GLY194 3.1 8.0 1.0 N A:PHE195 3.3 7.4 1.0 CG A:ASN147 3.6 7.9 1.0 CE3 A:TRP144 3.7 8.6 1.0 O A:PHE195 3.7 7.4 1.0 C A:GLY194 3.7 7.4 1.0 C A:MET145 3.8 6.6 1.0 ND2 A:ASN147 3.8 9.0 1.0 CB A:MET145 3.8 7.3 1.0 CE A:MET145 3.9 9.9 1.0 N A:MET145 4.2 7.0 1.0 CA A:MET145 4.2 6.9 1.0 CZ3 A:TRP144 4.3 9.4 1.0 N A:GLY194 4.4 7.8 1.0 CA A:PHE195 4.5 7.0 1.0 C A:PHE195 4.5 6.9 1.0 CG A:MET145 4.5 7.4 1.0 CA A:GLY178 4.6 8.4 1.0 CB A:TRP144 4.6 7.4 1.0 CD2 A:TRP144 4.6 8.4 1.0 N A:ASN147 4.8 7.0 1.0 O A:HOH2207 4.8 30.0 0.5 C A:PRO146 4.9 6.6 1.0 N A:PRO146 4.9 6.6 1.0 O A:GLY194 4.9 8.3 1.0 CB A:ASN147 4.9 7.9 1.0 C A:TRP144 4.9 6.6 1.0 SD A:MET145 5.0 8.4 1.0 CA A:ASN147 5.0 7.2 1.0

Sodium binding site 2 out of 2 in the X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Structure of the N-Terminal Domain of the Flocculin FLO11 From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1208 b:12.3 occ:1.00 O A:HOH2253 3.0 14.0 1.0 N A:ASP73 3.1 6.5 1.0 O A:HOH2123 3.6 22.8 1.0 CZ2 A:TRP70 3.7 7.1 1.0 CA A:ASP73 3.9 6.4 1.0 CH2 A:TRP70 4.1 7.5 1.0 C A:GLN72 4.1 6.1 1.0 OD1 A:ASP73 4.1 8.3 1.0 CB A:GLN72 4.2 8.2 1.0 CA A:GLN72 4.2 6.7 1.0 O A:HOH2124 4.5 12.4 1.0 O A:ASP73 4.5 6.5 1.0 C A:ASP73 4.8 6.1 1.0 CE2 A:TRP70 4.8 8.7 1.0 CG A:ASP73 4.8 7.5 1.0 CB A:ASP73 4.9 6.9 1.0

T.Kraushaar, S.Bruckner, M.Veelders, D.Rhinow, F.Schreiner, R.Birke, A.Pagenstecher, H.Mosch, L.Essen. Interactions By the Fungal FLO11 Adhesin Depend on A Fibronectin Type III-Like Adhesin Domain Girdled By Aromatic Bands. Structure V. 23 1005 2015.
ISSN: ISSN 0969-2126
PubMed: 25960408
DOI: 10.1016/J.STR.2015.03.021