Sodium in PDB 4uwo: Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding.

The structure of Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding., PDB code: 4uwo was solved by H.-K.S.Leiros, K.S.W.Edvardsen, G.E.K.Bjerga, O.Samuelsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.967 / 1.56
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.634, 67.882, 40.231, 90.00, 92.39, 90.00
R / Rfree (%)	15.26 / 18.63

The structure of Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding. also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Sodium atom in the Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding. (pdb code 4uwo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding., PDB code: 4uwo:

Sodium binding site 1 out of 1 in the Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Native Di-Zinc Vim-26. LEU224 in Vim-26 From Klebsiella Pneumoniae Has Implications For Drug Binding. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1296 b:35.5 occ:1.00 O B:HOH2163 2.1 38.5 1.0 H B:VAL109 2.1 20.7 1.0 O B:HOH2052 2.6 27.4 1.0 HB B:VAL109 2.9 19.3 1.0 N B:VAL109 3.0 17.2 1.0 HA B:PRO107 3.1 21.3 1.0 HD23 B:LEU96 3.1 22.4 1.0 HG21 B:VAL109 3.1 20.7 1.0 CB B:VAL109 3.6 16.1 1.0 O B:HOH2055 3.7 23.2 1.0 CG2 B:VAL109 3.7 17.3 1.0 CA B:VAL109 3.8 14.3 1.0 CA B:PRO107 3.9 17.8 1.0 C B:PRO107 3.9 17.7 1.0 O B:VAL109 4.0 16.0 1.0 HG22 B:VAL109 4.0 20.7 1.0 CD2 B:LEU96 4.1 18.6 1.0 HB3 B:LEU96 4.3 18.2 1.0 HD21 B:LEU96 4.3 22.4 1.0 C B:VAL109 4.4 14.2 1.0 HD22 B:LEU96 4.4 22.4 1.0 HD11 B:LEU96 4.5 20.7 1.0 HG23 B:VAL109 4.6 20.7 1.0 HB2 B:PRO107 4.6 21.6 1.0 HG23 B:VAL134 4.6 20.9 1.0 HA B:VAL109 4.6 17.1 1.0 O B:LEU106 4.6 18.7 1.0 CB B:PRO107 4.7 18.0 1.0 HB3 B:PRO107 4.7 21.6 1.0 HG22 B:ILE99 4.7 22.7 1.0 HA B:LEU96 4.8 14.9 1.0 HG23 B:ILE99 4.9 22.7 1.0 HG22 B:VAL134 4.9 20.9 1.0 CG1 B:VAL109 4.9 17.8 1.0 CG B:LEU96 5.0 13.3 1.0

H.S.Leiros, K.S.W.Edvardsen, G.E.K.Bjerga, O.Samuelsen. Structural and Biochemical Characterization of Vim-26 Show That LEU224 Has Implications For the Substrate Specificity of Vim Metallo-Beta-Lactamases. Febs J. 2015.
ISSN: ESSN 1742-4658
PubMed: 25601024
DOI: 10.1111/FEBS.13200