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Sodium in PDB 4uwn: Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B)

Enzymatic activity of Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B)

All present enzymatic activity of Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B):
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B), PDB code: 4uwn was solved by M.F.A.Santos, A.Mukhopadhyay, M.J.Romao, C.C.Romao, T.Santos-Silva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.52 / 1.67
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.930, 79.930, 36.890, 90.00, 90.00, 90.00
R / Rfree (%) 16.575 / 21.153

Other elements in 4uwn:

The structure of Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B) also contains other interesting chemical elements:

Ruthenium (Ru) 4 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B) (pdb code 4uwn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B), PDB code: 4uwn:

Sodium binding site 1 out of 1 in 4uwn

Go back to Sodium Binding Sites List in 4uwn
Sodium binding site 1 out of 1 in the Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Soaked with A Ruthenium Based Corm with A Methione Oxide Ligand (Complex 6B) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1131

b:18.6
occ:1.00
O A:SER60 2.3 18.3 1.0
O A:CYS64 2.4 16.6 1.0
O A:HOH2080 2.4 18.5 1.0
O A:HOH2076 2.5 17.8 1.0
O A:ARG73 2.5 20.8 1.0
OG A:SER72 2.5 20.9 1.0
CB A:SER72 3.3 21.6 1.0
C A:CYS64 3.5 15.8 1.0
C A:ARG73 3.5 23.3 1.0
C A:SER60 3.5 17.5 1.0
CA A:ASN65 3.9 16.4 1.0
N A:ARG73 3.9 25.5 1.0
N A:ASN65 4.1 16.6 1.0
C A:SER72 4.1 25.2 1.0
CA A:SER60 4.1 15.7 1.0
CB A:SER60 4.2 14.8 1.0
CA A:ARG73 4.3 26.4 1.0
CA A:SER72 4.3 23.9 1.0
N A:ASN74 4.4 23.2 1.0
N A:CYS64 4.5 15.4 1.0
CA A:ASN74 4.6 20.6 1.0
N A:ASP66 4.6 15.7 1.0
O A:ARG61 4.6 22.1 0.0
O A:SER72 4.6 27.4 1.0
N A:ARG61 4.6 18.4 0.0
C A:ARG61 4.6 21.0 0.0
CA A:CYS64 4.6 16.1 1.0
OD1 A:ASN65 4.7 21.2 1.0
CL A:CL1140 4.7 22.4 1.0
CB A:THR69 4.7 17.7 1.0
CB A:ASN74 4.7 21.0 1.0
CB A:ASN65 4.7 18.5 1.0
C A:ASN65 4.8 16.4 1.0
CA A:ARG61 4.8 21.9 0.0
N A:TRP62 4.9 20.2 1.0
O A:HOH2086 5.0 31.4 1.0

Reference:

J.Seixas, M.F.A.Santos, A.Mukhopadhyay, A.C.Coelho, P.M.Reis, L.F.Veiros, A.R.Marques, N.Penacho, A.M.L.Goncalves, M.J Romao, G.J.L.Bernardes, T.Santos-Silva, C.C.Romao. A Contribution to the Rational Design of Ru(Co) 3CI2L Complexes For in Vivo Delivery of Co Dalton Trans 2014.
ISSN: ESSN 1477-9234
PubMed: 25427784
DOI: 10.1039/C4DT02966F
Page generated: Tue Dec 15 08:41:35 2020

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