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Sodium in PDB 4usw: Crystal Structure of Human Soluble Adenylyl Cyclase with Atp

Enzymatic activity of Crystal Structure of Human Soluble Adenylyl Cyclase with Atp

All present enzymatic activity of Crystal Structure of Human Soluble Adenylyl Cyclase with Atp:
4.6.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Soluble Adenylyl Cyclase with Atp, PDB code: 4usw was solved by S.Kleinboelting, C.Steegborn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.55 / 2.05
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 101.090, 101.090, 96.750, 90.00, 90.00, 120.00
R / Rfree (%) 16.418 / 21.215

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Soluble Adenylyl Cyclase with Atp (pdb code 4usw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Soluble Adenylyl Cyclase with Atp, PDB code: 4usw:

Sodium binding site 1 out of 1 in 4usw

Go back to Sodium Binding Sites List in 4usw
Sodium binding site 1 out of 1 in the Crystal Structure of Human Soluble Adenylyl Cyclase with Atp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Soluble Adenylyl Cyclase with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1468

b:47.2
occ:1.00
O A:HOH2037 2.0 55.5 1.0
O2G A:ATP1471 2.1 62.6 1.0
O1B A:ATP1471 2.4 54.7 1.0
OD1 A:ASP99 2.4 37.5 1.0
OD1 A:ASP47 2.4 42.0 1.0
O A:HOH2073 2.4 51.0 1.0
PG A:ATP1471 3.3 56.2 1.0
CG A:ASP47 3.3 40.7 1.0
CG A:ASP99 3.3 38.8 1.0
OD2 A:ASP47 3.4 44.6 1.0
O A:HOH2072 3.5 46.2 1.0
PB A:ATP1471 3.5 60.4 1.0
OD2 A:ASP99 3.6 43.8 1.0
O1G A:ATP1471 3.6 57.0 1.0
O3B A:ATP1471 3.7 53.4 1.0
O A:ILE48 3.9 51.8 1.0
C5' A:ATP1471 4.0 89.6 1.0
O3A A:ATP1471 4.4 72.9 1.0
O A:HOH2070 4.5 40.2 1.0
O3G A:ATP1471 4.5 57.1 1.0
O5' A:ATP1471 4.6 85.3 1.0
O2B A:ATP1471 4.6 48.6 1.0
CB A:ASP99 4.6 34.6 1.0
C A:ILE48 4.7 43.5 1.0
CB A:ASP47 4.7 36.4 1.0
C A:ASP99 4.8 28.4 1.0
CB A:ALA100 4.8 24.8 1.0
O A:ASP99 4.9 27.1 1.0
N A:ASP99 4.9 29.5 1.0
N A:ALA100 5.0 28.6 1.0
CA A:ASP99 5.0 31.1 1.0

Reference:

S.Kleinbolting, J.Van Den Heuvel, C.Steegborn. Structural Analysis of Human Soluble Adenylyl Cyclase and Crystal Structures of Its Nucleotide Complexes - Implications For Cyclase Catalysis and Evolution. Febs J. V. 281 4151 2014.
ISSN: ISSN 1742-464X
PubMed: 25040695
DOI: 10.1111/FEBS.12913
Page generated: Tue Dec 15 08:41:18 2020

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