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Sodium in PDB 4qvs: 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405

Protein crystallography data

The structure of 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405, PDB code: 4qvs was solved by A.S.Halavaty, Z.Wawrzak, E.V.Filippova, G.Minasov, O.Kiryukhina, L.Shuvalova, R.Jedrzejczak, A.Joachimiak, W.F.Anderson, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.35 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 65.958, 74.813, 98.398, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 24.9

Other elements in 4qvs:

The structure of 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405 (pdb code 4qvs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405, PDB code: 4qvs:

Sodium binding site 1 out of 1 in 4qvs

Go back to Sodium Binding Sites List in 4qvs
Sodium binding site 1 out of 1 in the 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na502

b:48.8
occ:1.00
O A:HOH644 2.0 56.2 1.0
O A:ASN264 2.2 62.6 1.0
O A:MSE227 2.3 54.8 1.0
O A:ASN262 2.4 67.2 1.0
OD1 A:ASP229 2.5 58.3 1.0
C A:ASN264 3.4 62.9 1.0
C A:MSE227 3.5 58.0 1.0
C A:ASN262 3.5 79.2 1.0
CG A:ASP229 3.5 62.9 1.0
N A:ASN264 3.9 67.2 1.0
OD2 A:ASP229 4.0 58.5 1.0
CA A:MSE227 4.1 57.5 1.0
CB A:ASN262 4.2 78.3 1.0
CA A:ASN262 4.2 79.8 1.0
CA A:ASN264 4.3 65.9 1.0
C A:PHE228 4.3 60.8 1.0
O A:PHE228 4.4 60.3 1.0
N A:SER265 4.4 62.7 1.0
CB A:MSE227 4.4 53.0 1.0
N A:ASN262 4.4 75.8 1.0
N A:ASP229 4.5 60.2 1.0
N A:GLY263 4.5 75.8 1.0
N A:PHE228 4.5 51.6 1.0
C A:GLY263 4.6 72.3 1.0
OG A:SER265 4.6 54.4 1.0
CA A:SER265 4.6 56.6 1.0
CA A:ASP229 4.7 61.8 1.0
CB A:ASP229 4.7 64.5 1.0
CA A:GLY263 4.7 72.6 1.0
CA A:PHE228 4.8 47.0 1.0
CB A:PHE228 4.8 48.5 1.0

Reference:

A.S.Halavaty, Z.Wawrzak, E.V.Filippova, G.Minasov, O.Kiryukhina, L.Shuvalova, R.Jedrzejczak, A.Joachimiak, W.F.Anderson. 2.1 Angstrom Resolution Crystal Structure of S-Layer Domain-Containing Protein (Residues 221-444) From Clostridium Thermocellum Atcc 27405 To Be Published.
Page generated: Tue Dec 15 07:06:51 2020

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