Sodium in PDB 4qvb: Mycobacterium Tuberculosis Protein RV1155 in Complex with Co-Enzyme F420

The structure of Mycobacterium Tuberculosis Protein RV1155 in Complex with Co-Enzyme F420, PDB code: 4qvb was solved by E.H.Mashalidis, A.G.Gittis, A.Tomczak, C.Abell, C.E.Barry Iii, D.N.Garboczi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.53 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.579, 65.172, 77.063, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 25.4

The binding sites of Sodium atom in the Mycobacterium Tuberculosis Protein RV1155 in Complex with Co-Enzyme F420 (pdb code 4qvb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mycobacterium Tuberculosis Protein RV1155 in Complex with Co-Enzyme F420, PDB code: 4qvb:

Sodium binding site 1 out of 1 in the Mycobacterium Tuberculosis Protein RV1155 in Complex with Co-Enzyme F420


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mycobacterium Tuberculosis Protein RV1155 in Complex with Co-Enzyme F420 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na207 b:59.8 occ:1.00 O2P B:F42202 2.2 59.3 1.0 C B:FMT204 3.0 60.7 1.0 NE B:ARG55 3.4 55.2 1.0 P B:F42202 3.5 62.5 1.0 N B:ALA56 3.6 32.6 1.0 C1I B:F42202 3.6 55.6 1.0 O2 B:FMT204 3.6 63.8 1.0 O1 B:FMT204 3.6 62.7 1.0 CD B:ARG55 3.8 51.1 1.0 O5' B:F42202 3.8 62.9 1.0 CA B:ARG55 4.0 37.8 1.0 O3P B:F42202 4.0 56.4 1.0 CB B:ALA56 4.2 33.2 1.0 C B:ARG55 4.3 33.9 1.0 C2I B:F42202 4.3 53.8 1.0 C5' B:F42202 4.4 64.3 1.0 CB B:ARG55 4.4 38.6 1.0 CZ B:ARG55 4.5 56.3 1.0 C3I B:F42202 4.5 49.2 1.0 CA B:ALA56 4.5 30.9 1.0 O B:PRO54 4.7 45.5 1.0 NH2 B:ARG55 4.7 55.6 1.0 O1P B:F42202 4.7 48.9 1.0 CG B:ARG55 4.7 45.0 1.0 N1H B:F42202 4.8 51.2 1.0 NH1 B:ARG59 4.9 49.8 1.0

E.H.Mashalidis, A.G.Gittis, A.Tomczak, C.Abell, C.E.Barry, D.N.Garboczi. Molecular Insights Into the Binding of Coenzyme F420 to the Conserved Protein RV1155 From Mycobacterium Tuberculosis. Protein Sci. 2015.
ISSN: ESSN 1469-896X
PubMed: 25644473
DOI: 10.1002/PRO.2645