Sodium in PDB 4p60: Structure of the N-Terminal Domain of the Human Mitochondrial Aspartate/Glutamate Carrier Aralar in the Apo State

The structure of Structure of the N-Terminal Domain of the Human Mitochondrial Aspartate/Glutamate Carrier Aralar in the Apo State, PDB code: 4p60 was solved by C.Thangaratnarajah, J.J.Ruprecht, E.R.S.Kunji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.50 / 2.40
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	103.520, 103.520, 185.559, 90.00, 90.00, 120.00
R / Rfree (%)	24.5 / 29.7

The binding sites of Sodium atom in the Structure of the N-Terminal Domain of the Human Mitochondrial Aspartate/Glutamate Carrier Aralar in the Apo State (pdb code 4p60). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the N-Terminal Domain of the Human Mitochondrial Aspartate/Glutamate Carrier Aralar in the Apo State, PDB code: 4p60:

Sodium binding site 1 out of 1 in the Structure of the N-Terminal Domain of the Human Mitochondrial Aspartate/Glutamate Carrier Aralar in the Apo State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the N-Terminal Domain of the Human Mitochondrial Aspartate/Glutamate Carrier Aralar in the Apo State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:61.7 occ:1.00 O A:SER204 2.5 63.3 1.0 O A:ALA206 2.5 54.3 1.0 O A:GLY208 2.5 47.0 1.0 O A:SER211 3.1 51.0 1.0 O A:VAL203 3.2 62.9 1.0 C A:SER204 3.3 63.2 1.0 C A:ALA206 3.5 48.3 1.0 C A:GLY208 3.6 49.1 1.0 CA A:SER204 3.7 68.8 1.0 N A:GLY208 4.0 47.2 1.0 N A:ALA206 4.1 40.8 1.0 C A:VAL203 4.1 59.6 1.0 CA A:ALA206 4.3 45.0 1.0 C A:SER211 4.3 55.3 1.0 CA A:GLY208 4.3 40.2 1.0 C A:GLY207 4.3 55.7 1.0 N A:ALA205 4.3 58.8 1.0 C A:ALA205 4.4 47.1 1.0 N A:SER204 4.4 61.3 1.0 N A:GLY207 4.5 44.3 1.0 N A:SER209 4.6 56.3 1.0 CA A:HIS212 4.6 57.4 1.0 CA A:GLY207 4.7 44.4 1.0 CB A:ALA206 4.7 55.6 1.0 O A:ALA205 4.8 45.3 1.0 CA A:SER209 4.8 69.5 1.0 CA A:ALA205 4.8 56.8 1.0 O A:GLY207 4.9 59.3 1.0 CB A:SER204 4.9 71.1 1.0 N A:HIS212 5.0 50.2 1.0 ND1 A:HIS212 5.0 0.3 1.0

C.Thangaratnarajah, J.J.Ruprecht, E.R.S.Kunji. Structure of the N- and C-Terminal Domain Fusion of the Human Mitochondrial Aspartate/Glutamate Carrier Citrin in the Calcium-Bound State Nat Commun 2014.
ISSN: ESSN 2041-1723
DOI: 10.1038/NCOMMS6491