Atomistry » Sodium » PDB 4owb-4pcg » 4p5r
Atomistry »
  Sodium »
    PDB 4owb-4pcg »
      4p5r »

Sodium in PDB 4p5r: Structure of Oxidized W45Y Mutant of Amicyanin

Protein crystallography data

The structure of Structure of Oxidized W45Y Mutant of Amicyanin, PDB code: 4p5r was solved by N.Sukumar, V.L.Davidson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.44 / 1.09
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 27.147, 56.146, 28.688, 90.00, 95.89, 90.00
R / Rfree (%) 12.7 / 15.4

Other elements in 4p5r:

The structure of Structure of Oxidized W45Y Mutant of Amicyanin also contains other interesting chemical elements:

Copper (Cu) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Oxidized W45Y Mutant of Amicyanin (pdb code 4p5r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Oxidized W45Y Mutant of Amicyanin, PDB code: 4p5r:

Sodium binding site 1 out of 1 in 4p5r

Go back to Sodium Binding Sites List in 4p5r
Sodium binding site 1 out of 1 in the Structure of Oxidized W45Y Mutant of Amicyanin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Oxidized W45Y Mutant of Amicyanin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:10.4
occ:1.00
OH A:TYR90 2.7 4.8 1.0
O A:THR32 2.8 5.7 1.0
O A:LYS101 2.9 4.9 1.0
CZ A:TYR90 3.5 3.8 1.0
CB A:LEU35 3.6 4.6 1.0
CE1 A:TYR90 3.6 4.1 1.0
C A:LYS101 3.6 4.2 1.0
N A:LEU35 3.7 5.0 1.0
C A:PRO33 3.8 5.4 1.0
O A:PRO33 3.8 6.0 1.0
N A:LYS101 3.9 4.9 1.0
C A:THR32 4.0 5.5 1.0
N A:GLU34 4.1 5.4 1.0
CG2 A:VAL102 4.2 6.1 1.0
CA A:PRO33 4.2 6.8 1.0
CA A:LEU35 4.3 4.3 1.0
CG2 A:VAL23 4.3 5.5 1.0
CA A:LYS101 4.4 5.2 1.0
C A:GLU34 4.4 6.0 1.0
N A:VAL102 4.4 4.7 1.0
CA A:GLU34 4.4 5.9 1.0
N A:PRO33 4.6 5.9 1.0
C A:GLY100 4.7 4.2 1.0
CG1 A:VAL23 4.7 5.8 1.0
CA A:VAL102 4.7 4.4 1.0
CA A:GLY100 4.7 5.0 1.0
CG A:LEU35 4.8 5.0 1.0
CD2 A:LEU35 4.8 5.8 1.0
CE2 A:TYR90 4.8 4.6 1.0
CG2 A:THR32 4.9 5.4 1.0
OH A:TYR45 4.9 6.5 1.0
CE1 A:TYR45 4.9 4.8 1.0
CD1 A:TYR90 5.0 4.3 1.0
CB A:THR32 5.0 4.9 1.0

Reference:

B.A.Dow, N.Sukumar, J.O.Matos, M.Choi, A.Schulte, S.A.Tatulian, V.L.Davidson. The Sole Tryptophan of Amicyanin Enhances Its Thermal Stability But Does Not Influence the Electronic Properties of the Type 1 Copper Site. Arch.Biochem.Biophys. V.-551 20 2014.
ISSN: ESSN 1096-0384
PubMed: 24704124
DOI: 10.1016/J.ABB.2014.03.010
Page generated: Tue Dec 15 06:57:46 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy