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Sodium in PDB 4p3w: Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide

Protein crystallography data

The structure of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide, PDB code: 4p3w was solved by J.Seppala, U.Pentikainen, J.Ylanne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.86 / 2.00
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 88.154, 88.154, 394.709, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 22.6

Other elements in 4p3w:

The structure of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide also contains other interesting chemical elements:

Praseodymium (Pr) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide (pdb code 4p3w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide, PDB code: 4p3w:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4p3w

Go back to Sodium Binding Sites List in 4p3w
Sodium binding site 1 out of 2 in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Na2402

b:50.8
occ:0.33
O E:HOH2511 2.4 47.6 1.0
OD1 E:ASP2173 3.0 44.1 1.0
O E:HOH2516 3.1 37.8 0.3
CG E:ASP2173 4.0 41.0 1.0
OD2 E:ASP2173 4.1 43.9 1.0

Sodium binding site 2 out of 2 in 4p3w

Go back to Sodium Binding Sites List in 4p3w
Sodium binding site 2 out of 2 in the Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na2402

b:66.4
occ:0.33
O C:HOH2502 1.5 35.8 0.3
O C:HOH2511 2.4 57.4 1.0
OD1 C:ASP2173 3.1 63.1 1.0
CG C:ASP2173 4.0 60.4 1.0
OD2 C:ASP2173 4.3 63.9 1.0

Reference:

J.Seppala, U.Pentikainen, J.Ylanne. Crystal Structure of the Human Filamin A Ig-Like Domains 20-21 in Complex with Migfilin Peptide To Be Published.
Page generated: Tue Dec 15 06:57:40 2020

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