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Sodium in PDB 4oua: Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI)

Enzymatic activity of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI)

All present enzymatic activity of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI):
1.14.18.1;

Protein crystallography data

The structure of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI), PDB code: 4oua was solved by St.G.Mauracher, C.Molitor, R.Al-Oweini, U.Kortz, A.Rompel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.13 / 2.76
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 213.530, 83.720, 66.950, 90.00, 102.53, 90.00
R / Rfree (%) 18.6 / 22.8

Other elements in 4oua:

The structure of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI) also contains other interesting chemical elements:

Tungsten (W) 12 atoms
Tellurium (Te) 2 atoms
Copper (Cu) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI) (pdb code 4oua). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI), PDB code: 4oua:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in 4oua

Go back to Sodium Binding Sites List in 4oua
Sodium binding site 1 out of 4 in the Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:41.5
occ:1.00
 O A:GLY55 2.1 45.4 1.0
O A:PRO60 2.1 46.6 1.0
O A:HOH548 2.2 39.5 1.0
O A:GLY58 2.3 47.0 1.0
O A:HOH547 2.4 38.6 1.0
C A:GLY55 3.2 40.7 1.0
C A:PRO60 3.3 43.7 1.0
C A:GLY58 3.5 40.2 1.0
O A:ILE56 3.7 45.2 1.0
CA A:ILE56 3.9 37.5 1.0
N A:PRO60 3.9 42.8 1.0
C A:ILE56 3.9 43.5 1.0
C A:LEU59 3.9 40.9 1.0
N A:ILE56 3.9 35.7 1.0
O A:THR62 4.1 43.8 1.0
N A:THR62 4.2 48.6 1.0
O A:LEU59 4.2 41.7 1.0
CA A:PRO60 4.2 43.8 1.0
N A:PHE61 4.2 44.8 1.0
CA A:LEU59 4.3 38.5 1.0
CA A:GLY55 4.3 35.1 1.0
N A:LEU59 4.3 38.6 1.0
CA A:PHE61 4.3 37.9 1.0
CD A:PRO60 4.4 46.5 1.0
N A:GLY58 4.4 40.1 1.0
CA A:GLY58 4.4 40.1 1.0
O A:HOH508 4.6 34.3 1.0
N A:HIS57 4.7 42.2 1.0
CA A:GLY78 4.7 36.3 1.0
CD2 A:TYR79 4.7 38.6 1.0
CG A:PRO60 4.8 43.1 1.0
C A:PHE61 4.8 42.3 1.0
C A:HIS57 4.8 38.2 1.0
O A:SER77 4.9 41.6 1.0
CD1 A:PHE61 5.0 39.7 1.0
N A:TYR79 5.0 44.2 1.0

Sodium binding site 2 out of 4 in 4oua

Go back to Sodium Binding Sites List in 4oua
Sodium binding site 2 out of 4 in the Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na603

b:33.3
occ:1.00
 O B:HOH734 2.1 35.0 1.0
O B:PRO60 2.2 30.8 1.0
O B:GLY55 2.4 40.2 1.0
O B:GLY58 2.5 30.6 1.0
O B:HOH725 2.6 30.9 1.0
C B:PRO60 3.4 39.1 1.0
O B:ILE56 3.4 31.4 1.0
C B:GLY55 3.5 36.3 1.0
C B:GLY58 3.6 32.5 1.0
C B:ILE56 3.8 32.0 1.0
CA B:ILE56 3.8 31.1 1.0
N B:ILE56 4.1 31.4 1.0
CA B:PHE61 4.1 38.9 1.0
N B:PHE61 4.2 42.2 1.0
N B:PRO60 4.2 34.9 1.0
C B:LEU59 4.2 32.8 1.0
N B:THR62 4.2 33.3 1.0
O B:THR62 4.2 36.7 1.0
CA B:PRO60 4.4 39.4 1.0
CA B:GLY78 4.4 28.6 1.0
CA B:LEU59 4.4 32.3 1.0
N B:LEU59 4.4 34.2 1.0
CD2 B:TYR79 4.4 30.0 1.0
CA B:GLY58 4.5 30.2 1.0
N B:GLY58 4.5 35.0 1.0
O B:SER77 4.6 36.1 1.0
O B:LEU59 4.6 40.7 1.0
CD1 B:PHE61 4.6 32.0 1.0
N B:TYR79 4.6 31.9 1.0
N B:HIS57 4.6 30.3 1.0
CA B:GLY55 4.6 26.9 1.0
C B:PHE61 4.7 35.4 1.0
C B:HIS57 4.7 32.6 1.0
CD B:PRO60 4.8 35.1 1.0
O B:HIS57 4.8 38.9 1.0
CE2 B:TYR79 5.0 26.0 1.0

Sodium binding site 3 out of 4 in 4oua

Go back to Sodium Binding Sites List in 4oua
Sodium binding site 3 out of 4 in the Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na604

b:46.6
occ:1.00
 O B:GLU231 2.4 48.8 1.0
O B:GLY237 2.6 60.8 1.0
O B:ASN235 3.1 46.5 1.0
OD1 B:ASN235 3.3 53.7 1.0
C B:GLY237 3.4 64.4 1.0
N B:GLY237 3.4 57.9 1.0
CA B:GLY237 3.5 62.0 1.0
C B:GLU231 3.6 47.4 1.0
C B:ASN235 3.8 53.6 1.0
CB B:PHE239 3.8 60.7 1.0
C B:HIS236 3.9 60.1 1.0
CG B:ASN235 3.9 48.5 1.0
O B:HIS236 4.2 65.6 1.0
N B:PHE239 4.2 62.3 1.0
CA B:ALA232 4.2 45.7 1.0
N B:ALA232 4.3 45.9 1.0
OE1 B:GLU231 4.4 53.7 1.0
ND2 B:ASN235 4.4 45.6 1.0
N B:HIS236 4.4 58.3 1.0
N B:ASN235 4.5 45.9 1.0
CA B:ASN235 4.5 46.5 1.0
CA B:GLU231 4.6 47.6 1.0
C B:ALA232 4.6 48.9 1.0
N B:GLU238 4.6 66.9 1.0
CA B:PHE239 4.6 64.5 1.0
CA B:HIS236 4.7 50.5 1.0
OE2 B:GLU474 4.8 71.5 1.0
CB B:ASN235 4.8 46.4 1.0
O B:ALA232 4.8 45.2 1.0
CB B:GLU231 4.9 47.8 1.0
CG B:PHE239 4.9 56.5 1.0

Sodium binding site 4 out of 4 in 4oua

Go back to Sodium Binding Sites List in 4oua
Sodium binding site 4 out of 4 in the Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Coexistent Single-Crystal Structure of Latent and Active Mushroom Tyrosinase (ABPPO4) Mediated By A Hexatungstotellurate(VI) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na605

b:40.1
occ:0.70
 CD B:PRO9 2.3 31.5 1.0
OE1 B:GLU99 2.5 31.5 1.0
O B:LEU348 2.6 38.4 1.0
CG B:PRO9 3.0 34.6 1.0
CD B:GLU99 3.5 37.2 1.0
CD1 B:TYR350 3.6 29.1 1.0
N B:PRO9 3.7 30.1 1.0
NH2 B:ARG16 3.7 33.0 1.0
C B:LEU348 3.8 37.0 1.0
OG B:SER96 3.8 43.9 1.0
CB B:SER96 3.9 34.8 1.0
CA B:GLY8 3.9 31.2 1.0
CA B:SER96 4.0 33.0 1.0
CB B:LEU348 4.1 30.7 1.0
CG B:GLU99 4.2 32.2 1.0
OE2 B:GLU99 4.3 38.4 1.0
CE1 B:TYR350 4.3 28.2 1.0
O B:SER96 4.3 39.8 1.0
CB B:GLU99 4.3 27.9 1.0
CB B:PRO9 4.3 33.1 1.0
C B:GLY8 4.4 31.0 1.0
CG B:TYR350 4.4 30.1 1.0
CB B:TYR350 4.5 28.8 1.0
CA B:LEU348 4.5 37.0 1.0
C B:SER96 4.6 31.9 1.0
O B:ASN349 4.7 36.3 1.0
C B:ASN349 4.7 32.5 1.0
CA B:PRO9 4.8 34.8 1.0
CZ B:ARG16 4.8 28.4 1.0
N B:ASN349 4.8 30.4 1.0
CB B:ASN349 4.9 45.5 1.0

Reference:

S.G.Mauracher, C.Molitor, R.Al-Oweini, U.Kortz, A.Rompel. Latent and Active ABPPO4 Mushroom Tyrosinase Cocrystallized with Hexatungstotellurate(VI) in A Single Crystal. Acta Crystallogr.,Sect.D V. 70 2301 2014.
ISSN: ISSN 0907-4449
PubMed: 25195745
DOI: 10.1107/S1399004714013777
Page generated: Tue Dec 15 06:57:17 2020

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