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Sodium in PDB 4olf: Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp

Enzymatic activity of Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp

All present enzymatic activity of Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp:
6.1.1.15;

Protein crystallography data

The structure of Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp, PDB code: 4olf was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.24 / 2.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 106.550, 106.550, 186.160, 90.00, 90.00, 120.00
R / Rfree (%) 19.8 / 23.6

Other elements in 4olf:

The structure of Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp also contains other interesting chemical elements:

Bromine (Br) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp (pdb code 4olf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp, PDB code: 4olf:

Sodium binding site 1 out of 1 in 4olf

Go back to Sodium Binding Sites List in 4olf
Sodium binding site 1 out of 1 in the Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na818

b:64.6
occ:1.00
O A:TYR746 3.2 70.2 1.0
N A:GLN475 3.4 59.2 1.0
O1G A:ANP801 3.4 0.9 1.0
OG A:SER745 3.5 70.3 1.0
NH1 A:ARG514 3.6 64.4 1.0
O2G A:ANP801 3.6 0.9 1.0
C A:TYR746 3.9 72.3 1.0
CB A:GLN475 3.9 57.9 1.0
PG A:ANP801 4.0 0.4 1.0
CA A:ILE474 4.0 63.9 1.0
CG1 A:ILE474 4.2 68.4 1.0
O3G A:ANP801 4.2 0.7 1.0
C A:ILE474 4.2 59.9 1.0
CA A:GLN475 4.3 57.6 1.0
N A:TYR746 4.4 67.1 1.0
CB A:TYR746 4.4 66.2 1.0
CA A:TYR746 4.4 69.2 1.0
CZ A:ARG514 4.5 64.2 1.0
NH2 A:ARG401 4.5 99.2 1.0
OXT A:TYR746 4.6 75.3 1.0
O A:ALA473 4.6 59.0 1.0
CB A:ILE474 4.6 64.0 1.0
NH2 A:ARG514 4.7 66.2 1.0
CB A:SER745 4.8 67.8 1.0

Reference:

D.M.Dranow, T.E.Edwards, D.Lorimer, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of Prolyl-Trna Synthetase (Prors, Proline--Trna Ligase)From Plasmodium Falciparum in Complex with Halofuginone and Amppnp To Be Published.
Page generated: Tue Dec 15 06:56:58 2020

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