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Sodium in PDB 4oj1: Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus

Enzymatic activity of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus

All present enzymatic activity of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus:
3.6.1.7;

Protein crystallography data

The structure of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus, PDB code: 4oj1 was solved by I.Dilovic, M.Bolognesi, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.58 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.150, 41.330, 91.400, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 22

Other elements in 4oj1:

The structure of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus (pdb code 4oj1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus, PDB code: 4oj1:

Sodium binding site 1 out of 1 in 4oj1

Go back to Sodium Binding Sites List in 4oj1
Sodium binding site 1 out of 1 in the Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:19.5
occ:1.00
 OH A:TYR21 2.7 8.6 1.0
OD2 A:ASP85 2.8 13.4 1.0
CE1 A:TYR21 3.5 7.4 1.0
CZ A:TYR21 3.5 8.9 1.0
NE A:ARG19 3.6 18.4 1.0
CG A:ASP85 3.7 11.1 1.0
CB A:ASP85 3.7 10.2 1.0
CG A:ARG19 3.9 14.1 1.0
CB A:ARG19 3.9 11.8 1.0
CZ A:ARG19 4.1 14.4 1.0
NH2 A:ARG19 4.1 13.7 1.0
CD A:ARG19 4.2 17.2 1.0
CE2 A:TYR21 4.8 9.2 1.0
CD1 A:TYR21 4.8 8.2 1.0
OD1 A:ASP85 4.9 13.7 1.0

Reference:

I.Dilovic, M.Bolognesi, S.Ricagno. Crystal Structure of Truncated Acylphosphatase From S. Sulfataricus To Be Published.
Page generated: Mon Oct 7 17:28:48 2024

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