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Sodium in PDB 4oic: Crystal Structrual of A Soluble Protein

Enzymatic activity of Crystal Structrual of A Soluble Protein

All present enzymatic activity of Crystal Structrual of A Soluble Protein:
3.1.3.16;

Protein crystallography data

The structure of Crystal Structrual of A Soluble Protein, PDB code: 4oic was solved by Y.He, Q.Hao, W.Li, C.Yan, N.Yan, P.Yin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.74 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.190, 43.522, 73.994, 90.00, 92.53, 90.00
R / Rfree (%) 17 / 20.1

Other elements in 4oic:

The structure of Crystal Structrual of A Soluble Protein also contains other interesting chemical elements:

Manganese (Mn) 4 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structrual of A Soluble Protein (pdb code 4oic). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structrual of A Soluble Protein, PDB code: 4oic:

Sodium binding site 1 out of 1 in 4oic

Go back to Sodium Binding Sites List in 4oic
Sodium binding site 1 out of 1 in the Crystal Structrual of A Soluble Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structrual of A Soluble Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na505

b:21.0
occ:0.70
O B:HOH754 3.2 35.2 0.9
N B:GLU323 3.3 14.4 1.0
CG B:GLU323 3.7 26.4 1.0
CG B:ARG322 3.7 20.6 1.0
CB B:GLU323 3.9 20.4 1.0
CA B:ARG322 4.0 15.4 1.0
C B:ARG322 4.1 15.4 1.0
O B:HOH768 4.2 26.1 0.7
CA B:GLU323 4.3 17.0 1.0
CB B:ARG322 4.4 16.4 1.0
O B:HOH771 4.9 42.8 1.0
CD B:ARG322 4.9 20.3 1.0
O B:ASN321 5.0 18.3 1.0

Reference:

Y.He, Q.Hao, W.Li, C.Yan, N.Yan, P.Yin. Identification and Characterization of Aba Receptors in Oryza Sativa Plos One V. 9 95246 2014.
ISSN: ESSN 1932-6203
PubMed: 24743650
DOI: 10.1371/JOURNAL.PONE.0095246
Page generated: Tue Dec 15 06:56:53 2020

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