Sodium in PDB 4ofx: Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii

All present enzymatic activity of Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii:
4.2.1.22;

The structure of Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii, PDB code: 4ofx was solved by J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, A.Savchenko, W.F.Anderson, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.69 / 1.74
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.171, 99.739, 42.497, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.2

The binding sites of Sodium atom in the Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii (pdb code 4ofx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii, PDB code: 4ofx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:29.4 occ:1.00 O A:HOH535 2.2 29.0 1.0 O A:VAL9 2.3 19.3 1.0 O A:HOH523 2.4 32.0 1.0 O A:GLY11 2.5 21.0 1.0 O A:HOH513 2.6 23.4 1.0 O A:HOH517 2.7 22.8 1.0 C A:VAL9 3.5 18.6 1.0 C A:GLY11 3.7 22.0 1.0 O A:HOH506 4.0 21.6 1.0 CG1 A:VAL9 4.0 18.4 1.0 N A:GLY11 4.1 19.0 1.0 O A:HOH538 4.2 37.2 1.0 CA A:VAL9 4.2 15.1 1.0 C A:ILE10 4.3 22.2 1.0 O A:HOH512 4.3 20.9 1.0 O A:LYS12 4.4 20.5 1.0 CB A:LYS12 4.4 24.2 1.0 CA A:GLY11 4.5 20.6 1.0 O A:HOH526 4.5 32.4 1.0 O A:HOH612 4.5 40.9 1.0 N A:ILE10 4.5 17.5 1.0 O A:ILE10 4.5 20.7 1.0 C A:LYS12 4.5 21.3 1.0 N A:LYS12 4.6 20.9 1.0 CA A:ILE10 4.7 16.9 1.0 CB A:VAL9 4.8 18.3 1.0 CA A:LYS12 4.8 20.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:38.6 occ:1.00 O A:HOH715 2.2 40.3 1.0 O A:HOH598 2.2 46.2 1.0 O A:HOH720 2.2 61.4 1.0 OE1 A:GLU137 2.5 46.6 1.0 O A:HOH621 2.5 38.8 1.0 OE2 A:GLU137 2.6 51.7 1.0 CD A:GLU137 2.9 58.1 1.0 CG A:GLU137 4.4 37.4 1.0

J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, A.Savchenko, W.F.Anderson. Crystal Structure of A Putative Cystathionine Beta-Synthase From Coxiella Burnetii To Be Published.