Sodium in PDB 4of4: X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution

Enzymatic activity of X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution

All present enzymatic activity of X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution, PDB code: 4of4 was solved by V.V.Balaev, A.A.Lashkov, A.G.Gabdulkhakov, C.Betzel, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	75.47 / 1.40
*Space group*	H 3
*Cell size a, b, c (Å), α, β, γ (°)*	150.949, 150.949, 46.231, 90.00, 90.00, 120.00
*R / R_free (%)*	15.2 / 18.4

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution (pdb code 4of4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution, PDB code: 4of4:

Sodium binding site 1 out of 1 in 4of4

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Sodium Binding Sites List in 4of4

Sodium binding site 1 out of 1 in the X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na301 b:14.8 occ:1.00	OE1	B:GLU49	2.8	16.5	1.0
	OE1	A:GLU49	2.8	16.6	1.0
	O	B:ILE69	2.9	13.0	1.0
	O	A:ILE69	2.9	13.5	1.0
	OG	A:SER73	2.9	12.4	1.0
	OG	B:SER73	2.9	12.9	1.0
	O	B:HOH490	3.4	10.2	0.5
	O	B:HOH490	3.5	13.2	0.5
	CB	A:SER73	3.5	11.7	1.0
	CB	B:SER73	3.5	12.3	1.0
	N	A:ILE69	3.6	13.0	1.0
	N	B:ILE69	3.7	13.3	1.0
	C	A:ILE69	3.9	13.0	1.0
	C	B:ILE69	3.9	12.8	1.0
	CD	B:GLU49	3.9	17.4	1.0
	CD	A:GLU49	3.9	16.2	1.0
	C	A:GLY68	4.2	12.7	1.0
	CA	A:GLY68	4.3	12.8	1.0
	CA	A:ILE69	4.3	13.2	1.0
	CA	B:ILE69	4.3	13.1	1.0
	C	B:GLY68	4.3	13.6	1.0
	CG	A:GLU49	4.3	16.4	1.0
	CA	B:GLY68	4.3	13.7	1.0
	CG	B:GLU49	4.3	17.7	1.0
	CB	A:ILE69	4.7	13.6	1.0
	CA	B:SER73	4.8	12.3	1.0
	CB	B:ILE69	4.8	13.1	1.0
	CA	A:SER73	4.8	11.8	1.0
	N	B:SER73	4.9	11.9	1.0
	O	A:THR67	4.9	13.3	1.0
	N	A:SER73	4.9	11.7	1.0
	O	B:THR67	4.9	14.3	1.0
	OE2	B:GLU49	4.9	18.5	1.0
	OE2	A:GLU49	4.9	17.7	1.0

Reference:

V.V.Balaev, A.A.Lashkov, A.G.Gabdulkhakov, C.Betzel, A.M.Mikhailov. X-Ray Structure of Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.4 A Resolution To Be Published.

Page generated: Mon Oct 7 17:26:55 2024

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