Sodium in PDB 4oa8: X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form

The structure of X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form, PDB code: 4oa8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.05 / 2.15
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	73.150, 76.400, 79.530, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 23.2

The binding sites of Sodium atom in the X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form (pdb code 4oa8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form, PDB code: 4oa8:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:53.6 occ:1.00 OD1 A:ASP136 2.4 32.9 1.0 OD1 A:ASN163 2.8 43.7 1.0 OD2 A:ASP162 2.8 34.2 1.0 O A:ALA38 3.1 57.3 1.0 CG A:ASP136 3.4 29.8 1.0 OD2 A:ASP136 3.6 31.1 1.0 CG A:ASP162 3.7 31.7 1.0 CG A:ASN163 3.7 36.8 1.0 O A:HOH413 3.9 36.8 1.0 ND2 A:ASN163 3.9 35.7 1.0 CB A:ASP162 4.0 28.1 1.0 O A:HOH440 4.2 34.0 1.0 C A:ALA38 4.3 60.1 1.0 OD1 A:ASP162 4.7 30.2 1.0 CD1 A:LEU40 4.8 36.9 1.0 CB A:ASP136 4.8 28.7 1.0 O A:ASP136 4.9 27.0 1.0

Sodium binding site 2 out of 2 in the X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Na302 b:57.7 occ:1.00 OD1 B:ASP136 2.2 39.7 1.0 OD1 B:ASN163 2.6 43.1 1.0 OD2 B:ASP162 2.7 47.7 1.0 CG B:ASP136 3.2 37.5 1.0 O B:ALA38 3.4 58.2 1.0 OD2 B:ASP136 3.4 37.9 1.0 CG B:ASP162 3.5 40.2 1.0 CG B:ASN163 3.6 39.5 1.0 CB B:ASP162 3.8 35.9 1.0 ND2 B:ASN163 3.9 38.3 1.0 O B:HOH423 4.1 30.2 1.0 C B:ALA38 4.6 62.8 1.0 OD1 B:ASP162 4.6 42.5 1.0 CB B:ASP136 4.6 36.9 1.0 O B:ASP136 4.7 39.5 1.0 CD1 B:LEU40 4.7 35.7 1.0 CB B:ASN163 5.0 36.2 1.0 CA B:ASP136 5.0 36.0 1.0

J.W.Fairman, C.M.Lukacs, T.E.Edwards, D.Lorimer. X-Ray Crystal Structure of O-Methyltransferase From Anaplasma Phagocytophilum in Apo Form To Be Published.