Sodium in PDB 4o7j: Crystal Structure of Carg

The structure of Crystal Structure of Carg, PDB code: 4o7j was solved by E.M.Tichy, B.F.Luisi, G.P.C.Salmond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.470, 66.810, 50.450, 90.00, 95.69, 90.00
R / Rfree (%)	18.2 / 23.7

The binding sites of Sodium atom in the Crystal Structure of Carg (pdb code 4o7j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Carg, PDB code: 4o7j:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Carg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Carg within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:5.7 occ:1.00 O B:HOH301 2.2 18.7 1.0 O B:LEU20 2.3 22.1 1.0 OD1 B:ASN16 2.4 18.8 1.0 OD2 B:ASP22 2.4 14.8 1.0 OD1 B:ASP14 2.4 19.8 1.0 OD1 B:ASP22 2.5 13.5 1.0 OD1 B:ASP18 2.6 20.4 1.0 CG B:ASP22 2.8 15.9 1.0 CG B:ASP18 3.4 23.1 1.0 CG B:ASN16 3.4 18.4 1.0 C B:LEU20 3.5 20.7 1.0 CG B:ASP14 3.6 21.1 1.0 OD2 B:ASP18 3.7 22.5 1.0 ND2 B:ASN16 4.0 19.8 1.0 CB B:LEU20 4.1 21.7 1.0 CA B:LEU20 4.1 22.0 1.0 N B:LEU20 4.1 22.6 1.0 CB B:ASP22 4.3 15.6 1.0 OD2 B:ASP14 4.3 23.6 1.0 N B:ASN16 4.3 19.8 1.0 CA B:ASP14 4.3 19.3 1.0 N B:ASP22 4.4 15.4 1.0 N B:ASP18 4.4 25.9 1.0 N B:ILE15 4.4 18.5 1.0 CB B:ASP14 4.5 20.4 1.0 N B:GLN17 4.5 28.5 1.0 C B:ASP14 4.6 18.8 1.0 N B:LYS21 4.6 21.0 1.0 C B:LYS21 4.6 17.2 1.0 CB B:ASP18 4.6 23.3 1.0 CB B:ASN16 4.7 19.4 1.0 O B:HIS45 4.8 17.8 1.0 CG2 B:ILE44 4.8 16.0 1.0 CA B:ASN16 4.8 20.2 1.0 CA B:LYS21 4.8 22.3 1.0 N B:HIS45 4.9 14.7 1.0 CA B:ASP22 4.9 15.2 1.0 C B:ASN16 4.9 26.0 1.0 CA B:ASP18 4.9 24.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Carg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Carg within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:11.4 occ:1.00 O A:LEU20 2.0 25.6 1.0 O A:HOH301 2.3 24.5 1.0 OD1 A:ASN16 2.4 31.9 1.0 OD1 A:ASP14 2.4 25.8 1.0 OD1 A:ASP18 2.4 31.6 1.0 OD2 A:ASP22 2.5 16.3 1.0 OD1 A:ASP22 2.5 15.2 1.0 CG A:ASP22 2.9 16.8 1.0 C A:LEU20 3.2 25.7 1.0 CG A:ASP18 3.4 38.1 1.0 CG A:ASN16 3.5 24.6 1.0 CG A:ASP14 3.5 30.1 1.0 OD2 A:ASP18 3.9 38.8 1.0 CA A:LEU20 3.9 27.6 1.0 CB A:LEU20 3.9 25.8 1.0 N A:LEU20 4.0 27.9 1.0 ND2 A:ASN16 4.1 24.1 1.0 OD2 A:ASP14 4.3 33.7 1.0 N A:ASP22 4.3 17.6 1.0 N A:ASN16 4.3 23.7 1.0 N A:LYS21 4.3 25.3 1.0 CB A:ASP22 4.3 17.1 1.0 CA A:ASP14 4.4 26.6 1.0 N A:ASP18 4.4 39.0 1.0 CB A:ASP14 4.5 29.9 1.0 C A:LYS21 4.5 21.7 1.0 N A:ILE15 4.6 23.1 1.0 CA A:LYS21 4.6 25.8 1.0 N A:GLN17 4.6 34.8 1.0 CB A:ASP18 4.6 36.5 1.0 O A:HIS45 4.6 19.2 1.0 C A:ASP14 4.6 25.1 1.0 CB A:ASN16 4.7 27.1 1.0 C A:ASN16 4.8 32.9 1.0 CA A:ASN16 4.8 29.5 1.0 CA A:ASP22 4.8 16.7 1.0 CB A:HIS45 4.8 19.6 1.0 N A:HIS45 4.9 14.7 1.0 O A:LYS21 4.9 22.3 1.0 CA A:ASP18 5.0 39.2 1.0 CG2 A:ILE44 5.0 16.7 1.0

E.M.Tichy, B.F.Luisi, G.P.C.Salmond. Crystal Structure of the Carbapenem Intrinsic Resistance Protein, Carg J.Mol.Biol. 2014.
ISSN: ESSN 1089-8638
DOI: 10.1016/J.JMB.2014.02.016