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Sodium in PDB 4o34: Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation

Enzymatic activity of Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation

All present enzymatic activity of Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation:
3.2.1.17;

Protein crystallography data

The structure of Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation, PDB code: 4o34 was solved by F.Stellato, D.Oberthuer, M.Liang, R.Bean, C.Gati, O.Yefanov, A.Barty, A.Burkhardt, P.Fischer, L.Galli, R.A.Kirian, J.Mayer, S.Pannerselvam, C.H.Yoon, F.Chervinskii, E.Speller, T.A.White, C.Betzel, A.Meents, H.N.Chapman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.07 / 2.09
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.300, 79.300, 38.200, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 23

Other elements in 4o34:

The structure of Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation (pdb code 4o34). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation, PDB code: 4o34:

Sodium binding site 1 out of 1 in 4o34

Go back to Sodium Binding Sites List in 4o34
Sodium binding site 1 out of 1 in the Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Room Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:39.4
occ:1.00
OH A:TYR23 3.0 43.8 1.0
CZ A:TYR23 3.6 42.3 1.0
CE2 A:TYR23 3.6 41.9 1.0
CA A:GLY104 4.2 43.8 1.0
O A:ARG21 4.5 55.8 1.0
N A:GLY104 4.8 45.5 1.0
CE1 A:TYR23 4.8 41.2 1.0
CD2 A:TYR23 4.8 41.4 1.0

Reference:

F.Stellato, D.Oberthur, M.Liang, R.Bean, C.Gati, O.Yefanov, A.Barty, A.Burkhardt, P.Fischer, L.Galli, R.A.Kirian, J.Meyer, S.Panneerselvam, C.H.Yoon, F.Chervinskii, E.Speller, T.A.White, C.Betzel, A.Meents, H.N.Chapman. Room-Temperature Macromolecular Serial Crystallography Using Synchrotron Radiation. Iucrj V. 1 204 2014.
ISSN: ESSN 2052-2525
PubMed: 25075341
DOI: 10.1107/S2052252514010070
Page generated: Tue Dec 15 06:56:23 2020

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