Atomistry » Sodium » PDB 4nw9-4o9m » 4ny1
Atomistry »
  Sodium »
    PDB 4nw9-4o9m »
      4ny1 »

Sodium in PDB 4ny1: X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

Enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

All present enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution, PDB code: 4ny1 was solved by V.V.Balaev, A.G.Gabdoulkhakov, A.A.Lashkov, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.69 / 1.70
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 150.742, 150.742, 46.310, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 19.4

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution (pdb code 4ny1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution, PDB code: 4ny1:

Sodium binding site 1 out of 1 in 4ny1

Go back to Sodium Binding Sites List in 4ny1
Sodium binding site 1 out of 1 in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:18.3
occ:1.00
OE1 B:GLU49 2.7 11.1 1.0
OE1 A:GLU49 2.8 9.6 1.0
OG A:SER73 3.0 6.0 1.0
O A:ILE69 3.0 7.2 1.0
O B:ILE69 3.0 5.9 1.0
OG B:SER73 3.1 6.6 1.0
CB A:SER73 3.4 5.4 1.0
CB B:SER73 3.5 6.3 1.0
O B:HOH510 3.6 11.4 0.6
N A:ILE69 3.6 6.5 1.0
N B:ILE69 3.7 5.9 1.0
CD B:GLU49 3.8 11.4 1.0
CD A:GLU49 3.8 9.7 1.0
C A:ILE69 3.9 6.7 1.0
C B:ILE69 4.0 5.7 1.0
CG A:GLU49 4.1 9.2 1.0
CA A:GLY68 4.2 6.0 1.0
C A:GLY68 4.2 6.3 1.0
CG B:GLU49 4.2 11.2 1.0
CA A:ILE69 4.3 6.7 1.0
C B:GLY68 4.3 6.0 1.0
CA B:GLY68 4.3 6.2 1.0
CA B:ILE69 4.3 5.8 1.0
CB A:ILE69 4.7 6.8 1.0
O A:THR67 4.8 5.5 1.0
CA A:SER73 4.8 5.3 1.0
OE2 B:GLU49 4.8 11.8 1.0
CB B:ILE69 4.8 5.9 1.0
CA B:SER73 4.8 6.3 1.0
CB B:GLU49 4.8 11.2 1.0
OE2 A:GLU49 4.9 9.8 1.0
CB A:GLU49 4.9 9.3 1.0
O B:THR67 4.9 6.9 1.0
N A:SER73 5.0 5.3 1.0

Reference:

V.V.Balaev, A.G.Gabdoulkhakov, A.A.Lashkov, A.M.Mikhailov. X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution To Be Published.
Page generated: Tue Dec 15 06:56:07 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy