Sodium in PDB 4ny1: X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

Enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

All present enzymatic activity of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution, PDB code: 4ny1 was solved by V.V.Balaev, A.G.Gabdoulkhakov, A.A.Lashkov, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	37.69 / 1.70
*Space group*	H 3
*Cell size a, b, c (Å), α, β, γ (°)*	150.742, 150.742, 46.310, 90.00, 90.00, 120.00
*R / R_free (%)*	16.2 / 19.4

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution (pdb code 4ny1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution, PDB code: 4ny1:

Sodium binding site 1 out of 1 in 4ny1

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Sodium Binding Sites List in 4ny1

Sodium binding site 1 out of 1 in the X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na301 b:18.3 occ:1.00	OE1	B:GLU49	2.7	11.1	1.0
	OE1	A:GLU49	2.8	9.6	1.0
	OG	A:SER73	3.0	6.0	1.0
	O	A:ILE69	3.0	7.2	1.0
	O	B:ILE69	3.0	5.9	1.0
	OG	B:SER73	3.1	6.6	1.0
	CB	A:SER73	3.4	5.4	1.0
	CB	B:SER73	3.5	6.3	1.0
	O	B:HOH510	3.6	11.4	0.6
	N	A:ILE69	3.6	6.5	1.0
	N	B:ILE69	3.7	5.9	1.0
	CD	B:GLU49	3.8	11.4	1.0
	CD	A:GLU49	3.8	9.7	1.0
	C	A:ILE69	3.9	6.7	1.0
	C	B:ILE69	4.0	5.7	1.0
	CG	A:GLU49	4.1	9.2	1.0
	CA	A:GLY68	4.2	6.0	1.0
	C	A:GLY68	4.2	6.3	1.0
	CG	B:GLU49	4.2	11.2	1.0
	CA	A:ILE69	4.3	6.7	1.0
	C	B:GLY68	4.3	6.0	1.0
	CA	B:GLY68	4.3	6.2	1.0
	CA	B:ILE69	4.3	5.8	1.0
	CB	A:ILE69	4.7	6.8	1.0
	O	A:THR67	4.8	5.5	1.0
	CA	A:SER73	4.8	5.3	1.0
	OE2	B:GLU49	4.8	11.8	1.0
	CB	B:ILE69	4.8	5.9	1.0
	CA	B:SER73	4.8	6.3	1.0
	CB	B:GLU49	4.8	11.2	1.0
	OE2	A:GLU49	4.9	9.8	1.0
	CB	A:GLU49	4.9	9.3	1.0
	O	B:THR67	4.9	6.9	1.0
	N	A:SER73	5.0	5.3	1.0

Reference:

V.V.Balaev, A.G.Gabdoulkhakov, A.A.Lashkov, A.M.Mikhailov. X-Ray Structure of the Unliganded Uridine Phosphorylase From Yersinia Pseudotuberculosis at 1.7 A Resolution To Be Published.

Page generated: Mon Oct 7 17:19:59 2024

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