Sodium in PDB 4nwh: Lysozyme Under 30 Bar Pressure of Xenon

All present enzymatic activity of Lysozyme Under 30 Bar Pressure of Xenon:
3.2.1.17;

The structure of Lysozyme Under 30 Bar Pressure of Xenon, PDB code: 4nwh was solved by N.Colloc'h, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.65
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.306, 79.306, 38.072, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 20.8

The structure of Lysozyme Under 30 Bar Pressure of Xenon also contains other interesting chemical elements:

Xenon	(Xe)	2 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Lysozyme Under 30 Bar Pressure of Xenon (pdb code 4nwh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Under 30 Bar Pressure of Xenon, PDB code: 4nwh:

Sodium binding site 1 out of 1 in the Lysozyme Under 30 Bar Pressure of Xenon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Under 30 Bar Pressure of Xenon within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:35.8 occ:1.00 OG A:SER72 2.3 37.6 1.0 O A:SER60 2.3 16.8 1.0 O A:CYS64 2.4 14.9 1.0 O A:HOH332 2.6 21.0 1.0 CB A:SER72 2.8 35.9 1.0 C A:CYS64 3.4 14.7 1.0 C A:SER60 3.5 15.8 1.0 N A:ASN74 3.7 23.4 1.0 N A:ARG73 3.8 32.1 1.0 C A:SER72 3.8 34.2 1.0 CA A:ASN65 3.9 16.2 1.0 CA A:SER72 3.9 35.9 1.0 N A:ASN65 4.1 15.3 1.0 O A:ARG61 4.2 21.0 1.0 CA A:ASN74 4.2 21.4 1.0 C A:ARG61 4.3 20.7 1.0 CA A:SER60 4.3 13.8 1.0 N A:CYS64 4.3 14.4 1.0 O A:SER72 4.4 32.6 1.0 N A:ARG61 4.5 17.4 1.0 CB A:ASN74 4.5 20.9 1.0 CA A:CYS64 4.5 14.3 1.0 CA A:ARG61 4.6 20.3 1.0 CB A:SER60 4.6 13.3 1.0 C A:ARG73 4.6 29.4 1.0 CB A:ASN65 4.6 18.4 1.0 CA A:ARG73 4.7 31.5 1.0 OD1 A:ASN65 4.7 24.3 1.0 N A:TRP62 4.7 19.5 1.0 O A:HOH301 4.8 27.8 1.0 N A:ASP66 4.8 13.4 1.0 N A:TRP63 4.9 16.0 1.0 C A:ASN65 4.9 14.1 1.0 CB A:THR69 4.9 17.1 1.0 N A:SER72 4.9 36.4 1.0 C A:TRP62 4.9 18.4 1.0

J.H.Abraini, G.Marassio, H.N.David, B.Vallone, T.Prange, N.Colloc'h. Crystallographic Studies with Xenon and Nitrous Oxide Provide Evidence For Protein-Dependent Processes in the Mechanisms of General Anesthesia Anesthesiology 2014.
ISSN: ESSN 1528-1175
PubMed: 25211169
DOI: 10.1097/ALN.0000000000000435