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Sodium in PDB 4nwh: Lysozyme Under 30 Bar Pressure of Xenon

Enzymatic activity of Lysozyme Under 30 Bar Pressure of Xenon

All present enzymatic activity of Lysozyme Under 30 Bar Pressure of Xenon:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Under 30 Bar Pressure of Xenon, PDB code: 4nwh was solved by N.Colloc'h, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.65
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.306, 79.306, 38.072, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 20.8

Other elements in 4nwh:

The structure of Lysozyme Under 30 Bar Pressure of Xenon also contains other interesting chemical elements:

Xenon (Xe) 2 atoms
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme Under 30 Bar Pressure of Xenon (pdb code 4nwh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Under 30 Bar Pressure of Xenon, PDB code: 4nwh:

Sodium binding site 1 out of 1 in 4nwh

Go back to Sodium Binding Sites List in 4nwh
Sodium binding site 1 out of 1 in the Lysozyme Under 30 Bar Pressure of Xenon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Under 30 Bar Pressure of Xenon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:35.8
occ:1.00
OG A:SER72 2.3 37.6 1.0
O A:SER60 2.3 16.8 1.0
O A:CYS64 2.4 14.9 1.0
O A:HOH332 2.6 21.0 1.0
CB A:SER72 2.8 35.9 1.0
C A:CYS64 3.4 14.7 1.0
C A:SER60 3.5 15.8 1.0
N A:ASN74 3.7 23.4 1.0
N A:ARG73 3.8 32.1 1.0
C A:SER72 3.8 34.2 1.0
CA A:ASN65 3.9 16.2 1.0
CA A:SER72 3.9 35.9 1.0
N A:ASN65 4.1 15.3 1.0
O A:ARG61 4.2 21.0 1.0
CA A:ASN74 4.2 21.4 1.0
C A:ARG61 4.3 20.7 1.0
CA A:SER60 4.3 13.8 1.0
N A:CYS64 4.3 14.4 1.0
O A:SER72 4.4 32.6 1.0
N A:ARG61 4.5 17.4 1.0
CB A:ASN74 4.5 20.9 1.0
CA A:CYS64 4.5 14.3 1.0
CA A:ARG61 4.6 20.3 1.0
CB A:SER60 4.6 13.3 1.0
C A:ARG73 4.6 29.4 1.0
CB A:ASN65 4.6 18.4 1.0
CA A:ARG73 4.7 31.5 1.0
OD1 A:ASN65 4.7 24.3 1.0
N A:TRP62 4.7 19.5 1.0
O A:HOH301 4.8 27.8 1.0
N A:ASP66 4.8 13.4 1.0
N A:TRP63 4.9 16.0 1.0
C A:ASN65 4.9 14.1 1.0
CB A:THR69 4.9 17.1 1.0
N A:SER72 4.9 36.4 1.0
C A:TRP62 4.9 18.4 1.0

Reference:

J.H.Abraini, G.Marassio, H.N.David, B.Vallone, T.Prange, N.Colloc'h. Crystallographic Studies with Xenon and Nitrous Oxide Provide Evidence For Protein-Dependent Processes in the Mechanisms of General Anesthesia Anesthesiology 2014.
ISSN: ESSN 1528-1175
PubMed: 25211169
DOI: 10.1097/ALN.0000000000000435
Page generated: Tue Dec 15 06:56:05 2020

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