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Sodium in PDB 4nsj: Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5

Enzymatic activity of Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5

All present enzymatic activity of Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5:
3.2.1.17;

Protein crystallography data

The structure of Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5, PDB code: 4nsj was solved by S.W.M.Tanley, K.Diederichs, L.M.J.Kroon-Batenburg, C.Levy, A.M.M.Schreurs, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.50 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.496, 77.496, 37.123, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 25.8

Other elements in 4nsj:

The structure of Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5 also contains other interesting chemical elements:

Platinum (Pt) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5 (pdb code 4nsj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5, PDB code: 4nsj:

Sodium binding site 1 out of 1 in 4nsj

Go back to Sodium Binding Sites List in 4nsj
Sodium binding site 1 out of 1 in the Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Carboplatin Binding to Hewl in 2M NH4FORMATE, 0.1M Hepes at pH 7.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na222

b:21.1
occ:1.00
 OG A:SER72 2.3 31.3 1.0
O A:SER60 2.3 13.0 1.0
O A:HOH353 2.4 25.6 1.0
O A:ARG73 2.4 22.0 1.0
O1 A:FMT219 2.5 19.7 1.0
O A:CYS64 2.6 12.4 1.0
CB A:SER72 3.2 32.3 1.0
C A:ARG73 3.4 25.0 1.0
C A:SER60 3.4 13.8 1.0
C A:FMT219 3.6 27.9 1.0
C A:CYS64 3.7 13.2 1.0
N A:ARG73 4.0 26.3 1.0
CA A:ASN65 4.0 14.4 1.0
CA A:SER60 4.1 12.4 1.0
C A:SER72 4.1 33.0 1.0
O2 A:FMT219 4.2 24.5 1.0
CA A:SER72 4.3 33.8 1.0
N A:ASN65 4.3 12.8 1.0
CA A:ARG73 4.3 26.5 1.0
CB A:SER60 4.3 12.4 1.0
N A:ASN74 4.3 17.3 1.0
O A:ARG61 4.5 21.8 1.0
C A:ARG61 4.5 17.8 1.0
N A:CYS64 4.5 13.8 1.0
N A:ARG61 4.5 16.2 1.0
CB A:THR69 4.5 16.9 1.0
CA A:ASN74 4.5 17.5 1.0
O A:HOH355 4.5 31.9 1.0
O A:SER72 4.7 31.3 1.0
CB A:ASN74 4.7 18.5 1.0
OD1 A:ASN65 4.7 24.2 1.0
CA A:ARG61 4.7 19.4 1.0
N A:ASP66 4.8 11.4 1.0
CA A:CYS64 4.8 12.7 1.0
N A:TRP62 4.8 18.5 1.0
O A:THR69 4.8 22.1 1.0
CB A:ASN65 4.9 18.6 1.0
CG2 A:THR69 5.0 16.6 1.0
C A:ASN65 5.0 12.4 1.0

Reference:

S.W.Tanley, K.Diederichs, L.M.Kroon-Batenburg, C.Levy, A.M.Schreurs, J.R.Helliwell. Carboplatin Binding to Histidine. Acta Crystallogr F Struct V. 70 1135 2014BIOL Commun.
PubMed: 25195881
DOI: 10.1107/S2053230X14016161
Page generated: Tue Dec 15 06:55:52 2020

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