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Sodium in PDB 4nsg: Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A

Enzymatic activity of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A

All present enzymatic activity of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A:
3.2.1.17;

Protein crystallography data

The structure of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A, PDB code: 4nsg was solved by S.W.M.Tanley, K.Diederichs, L.M.J.Kroon-Batenburg, C.Levy, A.M.M.Schreurs, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.42 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.377, 78.377, 37.213, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 27.1

Other elements in 4nsg:

The structure of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A also contains other interesting chemical elements:

Bromine (Br) 9 atoms
Platinum (Pt) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A (pdb code 4nsg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A, PDB code: 4nsg:

Sodium binding site 1 out of 1 in 4nsg

Go back to Sodium Binding Sites List in 4nsg
Sodium binding site 1 out of 1 in the Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 1.5418A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na210

b:10.7
occ:0.82
 O A:SER60 2.2 13.8 1.0
O A:HOH332 2.3 17.9 1.0
O A:CYS64 2.3 11.6 1.0
O A:HOH320 2.6 10.9 1.0
OG A:SER72 2.6 15.1 1.0
O A:ARG73 2.6 15.6 1.0
CB A:SER72 3.3 15.3 1.0
C A:SER60 3.3 13.8 1.0
C A:CYS64 3.4 11.5 1.0
C A:ARG73 3.6 15.5 1.0
CA A:ASN65 3.9 11.6 1.0
N A:ARG73 4.0 15.6 1.0
CA A:SER60 4.0 13.3 1.0
N A:ASN65 4.1 11.6 1.0
CB A:SER60 4.1 13.2 1.0
C A:SER72 4.1 15.5 1.0
CA A:SER72 4.4 15.3 1.0
CA A:ARG73 4.4 15.8 1.0
N A:ARG61 4.4 14.6 1.0
C A:ARG61 4.5 15.2 1.0
N A:ASN74 4.5 15.1 1.0
N A:CYS64 4.5 11.7 1.0
O A:ARG61 4.6 15.0 1.0
N A:ASP66 4.6 11.5 1.0
CB A:THR69 4.6 13.9 1.0
CA A:CYS64 4.6 11.5 1.0
O A:SER72 4.7 15.5 1.0
CA A:ARG61 4.7 15.3 1.0
CA A:ASN74 4.7 14.9 1.0
CB A:ASN65 4.7 11.7 1.0
BR A:BR207 4.8 18.4 0.8
C A:ASN65 4.8 11.6 1.0
OD1 A:ASN65 4.8 11.7 1.0
N A:TRP62 4.9 14.9 1.0
CB A:ASN74 4.9 14.8 1.0
OG A:SER60 5.0 13.0 1.0
OG1 A:THR69 5.0 13.9 1.0

Reference:

S.W.Tanley, K.Diederichs, L.M.Kroon-Batenburg, C.Levy, A.M.Schreurs, J.R.Helliwell. Carboplatin Binding to Histidine. Acta Crystallogr F Struct V. 70 1135 2014BIOL Commun.
PubMed: 25195881
DOI: 10.1107/S2053230X14016161
Page generated: Mon Oct 7 17:16:52 2024

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